Commits · ac002edb3b6f4ec287dd1ce768028d2cda37837f · remy / OrthoFinder

Sep 27, 2016
- Handle sequences only score a BLAST hit in one direction. Resolves #31 · ac002edb
  David Emms authored 8 years ago
  
  View commits for tag 1.0.6 1.0.6
  
  ac002edb
Sep 26, 2016
- Allow for shutil.rmtree errors. Resolves #30 · 3d56a6e4
  David Emms authored 8 years ago
  
  3d56a6e4
Sep 09, 2016
- Allow orthologues workflow when adding & removing species · 3a5fc367
  David Emms authored 8 years ago
  
  3a5fc367
Sep 07, 2016
- Use requested number of processes for writing graph. Resolves #29 · da8d2bf5
  David Emms authored 8 years ago
  
  da8d2bf5
- Ignore inapplicable DeprecationWarning · 6e29cf46
  David Emms authored 8 years ago
  
  View commits for tag 1.0.2-beta 1.0.2-beta
  
  6e29cf46
- Deal with duplicate accessions · cda3449a
  David Emms authored 8 years ago
  
  cda3449a
- Deal with duplicate accessions · f324dc3f
  David Emms authored 8 years ago
  
  f324dc3f
- Output recon trees with original accessions · ed7cd312
  David Emms authored 8 years ago
  
  ed7cd312
- Refactor output files · 65909d05
  David Emms authored 8 years ago
  
  65909d05
- Add orthogroup ID to orthologues files · a8200702
  David Emms authored 8 years ago
  
  a8200702
- Don't split accessions at '|' for gene trees · c3689d16
  David Emms authored 8 years ago
  
  c3689d16
- Exit gracefully if orthologue dependencies not met · 5431faa6
  David Emms authored 8 years ago
  
  5431faa6
Sep 06, 2016
- Refactor unittest argument parsing · bf159761
  David Emms authored 8 years ago
  
  bf159761
- Update README.md · c222d914
  davidemms authored 8 years ago
  
  c222d914
- Add workflow image · 1b451977
  David Emms authored 8 years ago
  
  1b451977
- Move README to top level · 1b885fed
  David Emms authored 8 years ago
  
  1b885fed
- Organise files as package · 33769ab1
  David Emms authored 8 years ago
  
  33769ab1
Sep 02, 2016
- Remove dependency on ete2, use tree structure & file reading under GNU GPLv3 · 82ed8cc9
  David Emms authored 8 years ago
  
  82ed8cc9
Aug 30, 2016
- merge README changes · 32914222
  David Emms authored 8 years ago
  
  View commits for tag v1.0.0-beta v1.0.0-beta
  
  32914222
- Remove scripts directory · 9d2b9176
  David Emms authored 8 years ago
  
  9d2b9176
- Update README.md · 84461921
  SteveKellyLab authored 8 years ago
  
  84461921
- Update README.md · 353a0e62
  SteveKellyLab authored 8 years ago
  
  353a0e62
- Update README.md · 8a72af98
  SteveKellyLab authored 8 years ago
  
  8a72af98
- Update README.md · 35f663a8
  SteveKellyLab authored 8 years ago
  
  35f663a8
- Update README.md · 7ccb75ec
  SteveKellyLab authored 8 years ago
  
  7ccb75ec
- Integrate orthologues pipeline · ac9a45a4
  David Emms authored 8 years ago
  
  ac9a45a4
- Improve handling of large gene trees · e7b50221
  David Emms authored 8 years ago
  
  e7b50221
Aug 20, 2016
- Infer orthologues automagically · 19a91e81
  David Emms authored 8 years ago
  
  19a91e81
- Remove temporary files · 0c546ff1
  David Emms authored 8 years ago
  
  0c546ff1
- Analyse each of the best species tree roots · f3c37488
  David Emms authored 8 years ago
  
  f3c37488
Aug 19, 2016
- Tidy up output · fe6cb24c
  David Emms authored 8 years ago
  
  fe6cb24c
- Create one directory per species for orthologues · dabb9d86
  David Emms authored 8 years ago
  
  dabb9d86
Aug 18, 2016
- Infer Orthologues, first draft · aaa4a7d0
  David Emms authored 8 years ago
  
  aaa4a7d0
Aug 17, 2016
- Infer gene and species trees. Standardise interface and output directory structure · 0b473ba4
  David Emms authored 8 years ago
  
  0b473ba4
- Replace illegal characters in accessions. Resolves #28 · 37b1b0df
  David Emms authored 8 years ago
  
  37b1b0df
Jul 18, 2016
- Add testing of standalone binaries · 0d510bc4
  David Emms authored 8 years ago
  
  View commits for tag 0.7.1 0.7.1
  
  0d510bc4
- Add testing of standalone binaries · 680a44fe
  David Emms authored 8 years ago
  
  680a44fe
- Simplify output · e4d4385a
  David Emms authored 8 years ago
  
  e4d4385a
Jul 15, 2016
- Increment version number · ccb76a5d
  David Emms authored 8 years ago
  
  ccb76a5d
- Add description of statistics files · 3896b55b
  David Emms authored 8 years ago
  
  3896b55b