Organise files as package

Tests/test_orthofinder.py

...er/ExampleDataset/Mycoplasma_agalactiae_5632_FP671138.faa

...ampleDataset/Mycoplasma_gallisepticum_uid409_AE015450.faa

...der/ExampleDataset/Mycoplasma_genitalium_uid97_L43967.faa

...nder/ExampleDataset/Mycoplasma_hyopneumoniae_AE017243.faa

orthofinder/License.md

orthofinder/README.md

orthofinder/Workflow.png

orthofinder/__init__.py

orthofinder/orthofinder.py

orthofinder/scripts/__init__.py

orthofinder/scripts/blast_file_processor.py

orthofinder/scripts/get_orthologues.py

orthofinder/scripts/matrices.py

orthofinder/scripts/mcl.py

orthofinder/scripts/newick.py

orthofinder/scripts/orthologues_from_recon_trees.py

orthofinder/scripts/root_from_duplications.py

orthofinder/scripts/tree.py

orthofinder/scripts/util.py