Remove temporary files

...llowedCharacters/Mycoplasma_agalactiae_5632_FP671138.faa~

...allowedCharacters/Mycoplasma_genitalium_uid97_L43967.faa~

...sallowedCharacters/Mycoplasma_hyopneumoniae_AE017243.faa~

...ut/DisallowedCharacters/WorkingDirectory/SequenceIDs.txt~

.../Input/DisallowedCharacters/WorkingDirectory/Species0.fa~

.../Input/DisallowedCharacters/WorkingDirectory/Species1.fa~

.../Input/DisallowedCharacters/WorkingDirectory/Species2.fa~

...ectory/clusters_OrthoFinder_v0.7.1_I1.5.txt_id_pairs.txt~

...rs/WorkingDirectory/clusters_OrthoFinder_v0.7.1_I1.5.txt~