Commits · master · mmassaviol / WAWmassaviol

Dec 08, 2021
- cases where SeorPe parameter is not set (minion) · 84e27d07
  khalid authored 3 years ago
  
  84e27d07
- test if igv prefs file exists · 4c50a0ce
  khalid authored 3 years ago
  
  4c50a0ce
- remove space in samtools command · 0be9b229
  khalid authored 3 years ago
  
  0be9b229
Dec 07, 2021
- Handle guppy outputs · 6e52ef6c
  khalid authored 3 years ago
  
  6e52ef6c
- change params names · 71ed0e74
  khalid authored 3 years ago
  
  71ed0e74
Dec 06, 2021
- Change topGenes name · b8e756a4
  khalid authored 3 years ago
  
  b8e756a4
- Debug snap align · 4629d1f3
  khalid authored 3 years ago
  
  4629d1f3
Dec 03, 2021
- Debug snap index · 1ca87e13
  khalid authored 3 years ago
  
  1ca87e13
- Debug snap · 29a281b5
  khalid authored 3 years ago
  
  29a281b5
- Add snap index · 0ce141b4
  khalid authored 3 years ago
  
  0ce141b4
- Add snap mapper · e958d8de
  khalid authored 3 years ago
  
  e958d8de
- remove redunant param · af1c1a5e
  khalid authored 3 years ago
  
  af1c1a5e
Dec 02, 2021
- remove a bug in MitoZ biopython gbf parsing · 2257202a
  khalid authored 3 years ago
  
  2257202a
- change IGV default genome · 4a790cb6
  khalid authored 3 years ago
  
  4a790cb6
- Change Megahit PE output to contigs · e6f78bfc
  khalid authored 3 years ago
  
  e6f78bfc
- Change Megahit PE output to contigs · 4d7f2aba
  khalid authored 3 years ago
  
  4d7f2aba
Dec 01, 2021
- debug accel_align index · 78b9ac73
  khalid authored 3 years ago
  
  78b9ac73
- debug accel_align · f1b5e9a6
  khalid authored 3 years ago
  
  f1b5e9a6
- debug accel_align · 22e29eaf
  khalid authored 3 years ago
  
  22e29eaf
- debug accel_align · dd67d851
  khalid authored 3 years ago
  
  dd67d851
- debug accel_align indexing · fe7395dd
  khalid authored 3 years ago
  
  fe7395dd
- debug accel_align indexing · f9dc3aa4
  khalid authored 3 years ago
  
  f9dc3aa4
- debug accel_align · 1ac4ea2a
  khalid authored 3 years ago
  
  1ac4ea2a
- debug accel_align · d31857a1
  khalid authored 3 years ago
  
  d31857a1
- Add raw indexing · a37db254
  khalid authored 3 years ago
  
  a37db254
- Add Accel-Align mapper · 30151f79
  khalid authored 3 years ago
  
  30151f79
- flye assembly name change · 3cf1fb11
  khalid authored 3 years ago
  
  3cf1fb11
Nov 30, 2021
- remove uneaded spaces · 15143857
  khalid authored 3 years ago
  
  15143857
- flye typo · 7d93bee1
  khalid authored 3 years ago
  
  7d93bee1
- flye typo · 2165eb22
  khalid authored 3 years ago
  
  2165eb22
- flye output is of contigs format · 9e8f31d7
  khalid authored 3 years ago
  
  9e8f31d7
Nov 29, 2021
- remove empty first line from flye fasta assembly · bee02e81
  khalid authored 3 years ago
  
  bee02e81
- Add flye assembler · 5f87f1fd
  khalid authored 3 years ago
  
  5f87f1fd
- change pre-prcessing fasta assembly to find mito scaffold · d9e44cd8
  khalid authored 3 years ago
  
  d9e44cd8
- minimap2 redirect stderr bug · 6ea0517e
  khalid authored 3 years ago
  
  6ea0517e
Nov 27, 2021
- debuh guppy · 74bea51c
  khalid authored 3 years ago
  
  74bea51c
- debuh guppy · f61290f9
  khalid authored 3 years ago
  
  f61290f9
- debuh guppy · dbfbad0c
  khalid authored 3 years ago
  
  dbfbad0c
- mistyping in fast5_dir · 48053511
  khalid authored 3 years ago
  
  48053511
Nov 26, 2021
- debuh guppy · 6ef1fe9f
  khalid authored 3 years ago
  
  6ef1fe9f