debuh guppy

tools/guppy/guppy.rule.snakefile

 rule <step_name>__guppy:
         input:
             **<step_name>__guppy_inputs()
+        output:
+           sequencing_summary =   config["results_dir"] + "/" + config["<step_name>__guppy_output_dir"]+ "/sequencing_summary.txt" , 
         params:
             output_dir = config["results_dir"] + "/" + config["<step_name>__guppy_output_dir"]+ "/",
             command = config["<step_name>__guppy_command"],

tools/guppy/guppy.yaml

@@ -20,7 +20,7 @@
         ],
         outputs:
           [
-            { name: sequencing_summary.txt, type: "tsv", file: "markers_table.txt", description: "Table containing sequencing summary" },
+            { name: sequencing_summary, type: "tsv", file: "sequencing_summary.txt", description: "Table containing sequencing summary" },
             { name: readPass, type: "reads", file: "guppy_pass.fastq.gz", description: "File containing reads with an average quality score > Q7" },
             { name: readFail, type: "reads", file: "guppy_fail.fastq.gz", description: "File containing reads with an average quality score < Q7" },
           ],