diff --git a/tools/guppy/guppy.rule.snakefile b/tools/guppy/guppy.rule.snakefile index 0aa8f31d6da03c4d61aa8e3d59162d5b60513b6f..a6220d20ac0a03c8e89a1dfa8706b0d96c581ac8 100644 --- a/tools/guppy/guppy.rule.snakefile +++ b/tools/guppy/guppy.rule.snakefile @@ -1,6 +1,8 @@ rule <step_name>__guppy: input: **<step_name>__guppy_inputs() + output: + sequencing_summary = config["results_dir"] + "/" + config["<step_name>__guppy_output_dir"]+ "/sequencing_summary.txt" , params: output_dir = config["results_dir"] + "/" + config["<step_name>__guppy_output_dir"]+ "/", command = config["<step_name>__guppy_command"], diff --git a/tools/guppy/guppy.yaml b/tools/guppy/guppy.yaml index 8ed727a14af3a679c32123ddeb8569519c7930bf..4feec09f1062d438f8b6a4adcb6cde2280c91e4c 100644 --- a/tools/guppy/guppy.yaml +++ b/tools/guppy/guppy.yaml @@ -20,7 +20,7 @@ ], outputs: [ - { name: sequencing_summary.txt, type: "tsv", file: "markers_table.txt", description: "Table containing sequencing summary" }, + { name: sequencing_summary, type: "tsv", file: "sequencing_summary.txt", description: "Table containing sequencing summary" }, { name: readPass, type: "reads", file: "guppy_pass.fastq.gz", description: "File containing reads with an average quality score > Q7" }, { name: readFail, type: "reads", file: "guppy_fail.fastq.gz", description: "File containing reads with an average quality score < Q7" }, ],