Commits · ccc0a3c8ebd9cdb3b7585df4974881323779771d · iago-lito / snom

Jun 26, 2023
- Improve error with wrong input separator. · ccc0a3c8
  Iago-lito authored 1 year ago
  
  ccc0a3c8
- Tweak output separator. · 4064a577
  Iago-lito authored 1 year ago
  
  4064a577
- Optionally read from stdin with '-'. · 26671678
  Iago-lito authored 1 year ago
  
  26671678
- Output to stdout instead of file. · 2ac74f25
  Iago-lito authored 1 year ago
  
  2ac74f25
Jun 23, 2023
- Revert output tweaks to simplify core program. · b460108f
  Iago-lito authored 1 year ago
  
  b460108f
Jun 12, 2023
- Output id column. · 21d401c8
  Iago-lito authored 1 year ago
  
  21d401c8
Jun 07, 2023
- Rename to `snom`. Benjamin and Khalid co-authored. · b1cad78f
  Iago Bonnici authored 1 year ago
  
  b1cad78f
Jun 06, 2023
- Test line processing. · bfdbcec1
  Iago Bonnici authored 1 year ago
  
  bfdbcec1
Jun 05, 2023
- Drop utf8 checking and recycle line allocation. · 558ea373
  Iago Bonnici authored 1 year ago
  
  558ea373
- Process btop sequences. · 414d6e58
  Iago Bonnici authored 1 year ago
  
  414d6e58
- Display number of processed lines. · b58c2368
  Iago-lito authored 1 year ago
  
  b58c2368
- Control display order of arguments in help menu. · 8604f15a
  Iago-lito authored 1 year ago
  
  8604f15a
- Fix a few clippy warnings. · 27d06c8f
  Iago-lito authored 1 year ago
  
  27d06c8f
- Allow --columns-used with a header. · 96bf7486
  Iago-lito authored 1 year ago
  
  96bf7486
- Base position and optional nucleotide in qseqid · 5bc232d1
  Iago-lito authored 1 year ago
  
  5bc232d1
- Prepare for optional btop column input. · 471fa63a
  Iago-lito authored 1 year ago
  
  471fa63a
May 12, 2023
- Rename Arguments to Config and test skips parsing. · 66b9759f
  Iago-lito authored 1 year ago
  
  66b9759f
- Improve stdout feedback. · e3c78ddd
  Iago-lito authored 1 year ago
  
  e3c78ddd
- Expect header before requiring raw column numbers. · 1ec61b64
  Iago-lito authored 1 year ago
  
  1ec61b64
- Improve error handling and display. · 4795b2de
  Iago-lito authored 1 year ago
  
  4795b2de
May 11, 2023
- Split into various modules. · 55adc128
  Iago-lito authored 1 year ago
  
  55adc128
Apr 25, 2023
- Stop requiring nightly. · 7597caa1
  Iago-lito authored 2 years ago
  
  7597caa1
- Group imports with rustfmt. · b7c8a5b2
  Iago-lito authored 2 years ago
  
  b7c8a5b2
Dec 13, 2022
- Add column numbers and separator as parameters. · a8aa0011
  Iago-lito authored 2 years ago
  
  a8aa0011
Apr 01, 2022
- Assert that sequences do not start with indels. · 019286ba
  Iago-lito authored 3 years ago
  
  019286ba
- Fix bug with insertions just before seeked base. · 0dde76b0
  Iago-lito authored 3 years ago
  
  0dde76b0
- Final tweaks to make it ready. · dd103ec4
  Iago-lito authored 3 years ago
  
  dd103ec4
- Few tests and fixes. · a6605c00
  Iago-lito authored 3 years ago
  
  a6605c00
- Use index-skid style to find correct base. · ca46909b
  Iago-lito authored 3 years ago
  
  ca46909b
- Write to output file. · acae88ab
  Iago-lito authored 3 years ago
  
  acae88ab
- Check that base falls in blast result, or NA out. · 465f51e0
  Iago-lito authored 3 years ago
  
  465f51e0
- Refactor fields reading without macros. · e7365523
  Iago-lito authored 3 years ago
  
  e7365523
- Parst blast line, check seqs lengths equality. · e535fe86
  Iago-lito authored 3 years ago
  
  e535fe86
- Read input file line by line. · 7b7e2e3c
  Iago-lito authored 3 years ago
  
  7b7e2e3c
- Basic CLI with clap. · 4bde6cfe
  Iago-lito authored 3 years ago
  
  4bde6cfe
- Authors, License. · 498c5b33
  Iago-lito authored 3 years ago
  
  498c5b33
- First commit, cargo hello world. · 8826a72d
  Iago-lito authored 3 years ago
  
  8826a72d