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iago-lito
aphid
Commits
d30db4efbbb6a36340b926e6d97c092c1f2edf88
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aphid
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Dec 18, 2024
Explain initialization heuristic.
· d30db4ef
iago-lito
authored
4 months ago
d30db4ef
Proofread doc start.
· e2e65c50
iago-lito
authored
4 months ago
e2e65c50
Bump dependencies.
· 7c0fa2ff
iago-lito
authored
5 months ago
7c0fa2ff
Heuristic starting points and parallel searches.
· 08c4a8f1
iago-lito
authored
6 months ago
08c4a8f1
Check in Cargo.lock.
· 0b01e4a3
iago-lito
authored
6 months ago
0b01e4a3
Deploy doc with Gitlab CI.
· 30f4cf41
iago-lito
authored
6 months ago
30f4cf41
Start writing the aphid book
· 55238d13
iago-lito
authored
7 months ago
55238d13
Sep 13, 2024
Output high-level results as `global.json`.
· 0a287bc7
iago-lito
authored
7 months ago
0a287bc7
Sep 12, 2024
Display relative paths to unclutter stdout.
· c16baff4
iago-lito
authored
7 months ago
c16baff4
Integrate learning output into the global logic.
· f5479ec6
iago-lito
authored
7 months ago
f5479ec6
Sep 06, 2024
Export scalar tree data as CSV.
· 1ab7383e
iago-lito
authored
7 months ago
1ab7383e
Switch to color_print.
· 0076283b
iago-lito
authored
7 months ago
0076283b
Sep 02, 2024
Move most stdout output to `detail.json`.
· 76b9b0bf
iago-lito
authored
7 months ago
76b9b0bf
Aug 29, 2024
Expose `main/linsearch` csv trace files.
· c0965091
iago-lito
authored
8 months ago
c0965091
Small proofreading of the main function.
· 1f6b4433
iago-lito
authored
8 months ago
1f6b4433
Full config detail export is proper json.
· ae33f18c
iago-lito
authored
8 months ago
ae33f18c
Jul 24, 2024
Export full config detail as an output warmup.
· 719e496a
iago-lito
authored
9 months ago
719e496a
Guard against missing fields in debug display.
· b509da3d
iago-lito
authored
9 months ago
b509da3d
Resolve file paths relatively to the config file.
· 3b1106c6
iago-lito
authored
9 months ago
3b1106c6
Jul 22, 2024
Implement Nocedal & Wright 2006 BFGS algorithm.
· c0b0be69
iago-lito
authored
1 year ago
c0b0be69
Mar 11, 2024
Switch to AdamW optimizer, expose search parms.
· e6a95e85
iago-lito
authored
1 year ago
e6a95e85
Stop requesting cuda device.
· e83726bb
iago-lito
authored
1 year ago
e83726bb
Mar 07, 2024
Weak consistency check for two likelihood calcs.
· 78c782a6
iago-lito
authored
1 year ago
78c782a6
Fix the semantics of `unresolved_length`.
· 1f2a63c6
iago-lito
authored
1 year ago
1f2a63c6
Temporary fix, work around Glog subdep upgrade.
· b2dfbc93
iago-lito
authored
1 year ago
b2dfbc93
Feb 15, 2024
Fix/Update README.md.
· e44f6d33
iago-lito
authored
1 year ago
e44f6d33
Update container with pytorch (no CUDA yet).
· 57718870
iago-lito
authored
1 year ago
57718870
Forbid that tau_1 == tau_2.
· 321bbddb
iago-lito
authored
1 year ago
321bbddb
Bump dependencies.
· 00974711
iago-lito
authored
1 year ago
00974711
Optimize likelihood with torch.
· 170d54ae
iago-lito
authored
1 year ago
170d54ae
Satisfy clippy.
· 16533383
iago-lito
authored
1 year ago
16533383
Fix `max_clock_ratio` meaning: Geometry Filter.
· c1b52965
iago-lito
authored
1 year ago
c1b52965
Implement unresolved_length. Clarify length units.
· 5f8bc8da
iago-lito
authored
1 year ago
5f8bc8da
Implement max_clock_ratio filter.
· 48a7e5ed
iago-lito
authored
1 year ago
48a7e5ed
Satisfy clippy.
· 1cc19c87
iago-lito
authored
1 year ago
1cc19c87
Implement triplet_other_monophyly filter.
· ee09a8b2
iago-lito
authored
1 year ago
ee09a8b2
Start accumulating iterators from non-root nodes.
· 83570784
iago-lito
authored
1 year ago
83570784
Orient children in downwards tree accumulators.
· 8008fad7
iago-lito
authored
1 year ago
8008fad7
Retrieve left-descendance ancestor information.
· 0917bbeb
iago-lito
authored
1 year ago
0917bbeb
Iterate up from node to root.
· 10f264f5
iago-lito
authored
1 year ago
10f264f5
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