Heuristic starting points and parallel searches.

Cargo.lock

Cargo.toml

doc/src/use.md

src/bin/aphid/main.rs

src/config.rs

src/config/defaults.rs

src/config/expand.rs

src/config/raw.rs

src/gene_tree/parse.rs

src/interner.rs

src/io.rs

src/learn.rs

src/lexer.rs

src/lib.rs

src/model/likelihood.rs

src/model/parameters.rs

src/model/scores.rs

src/optim.rs

src/optim/bfgs.rs

src/optim/gd.rs