Commits · eb0e36b9069fe62caf2f426fa31818e0b8ff5e49 · edna / snakemake_rapidrun_obitools · GitLab

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Mar 13, 2023
- docs(changelog): update change in v1.3.0 · eb0e36b9
  mbruno authored 2 years ago
  
  View commits for tag 1.3.0 1.3.0
  
  eb0e36b9
- fix(write_demultiplex_files.py): correct mkdir · 52025f46
  mbruno authored 2 years ago
  
  52025f46
Mar 07, 2023
- refactor: simplifying the code · b5162a8b
  mbruno authored 2 years ago
  
  b5162a8b
- docs(scripts/write_demultiplex_files.py): correct a comment · b71b5678
  mbruno authored 2 years ago
  
  b71b5678
- refactor: replace "singularity" by "container" (Deprecated singularity directive) · a85d86fd
  mbruno authored 2 years ago
  
  a85d86fd
Feb 15, 2023
- prepare_spygen.R: delete an unnecessary line of code · c9836fd8
  mbruno authored 2 years ago
  
  c9836fd8
- fix(prepare_spygen.R): remove the extra '_' in CNEG and POOL samples · 52d17649
  mbruno authored 2 years ago
  
  52d17649
Jan 27, 2023
- fix(write_demultiplex_files.py): The first sample of all_samples is now analysed · 7b9c62b6
  mbruno authored 2 years ago
  
  7b9c62b6
Dec 16, 2022
- style(config_template): fix typo · d9862088
  mbruno authored 2 years ago
  
  d9862088
Dec 15, 2022
- Merge branch 'master' of https://gitlab.mbb.cnrs.fr/edna/snakemake_rapidrun_obitools · 8cf656c9
  mbruno authored 2 years ago
  
  8cf656c9
- fix(clean_pcrerr_samples): fix obiclean error when empty input file · afa6bdad
  mbruno authored 2 years ago
  
  afa6bdad
Dec 12, 2022
- fix(obitools_envs): conda env creation too long · ff76f358
  mbruno authored 2 years ago
  ff76f358
- refactor(rules, config): rename some subfolders keys · 94f4cc86
  mbruno authored 2 years ago
  
  94f4cc86
- Merge branch 'develop' · 0850232c
  mbruno authored 2 years ago
  
  0850232c
Nov 28, 2022
- style(Snakefile): fix typo · c29e8d28
  mbruno authored 2 years ago
  
  c29e8d28
- status(Snakefile): Developement to Production · 35b6acfe
  mbruno authored 2 years ago
  
  35b6acfe
- docs(readme): update Quick Start in README.md · e83de952
  mbruno authored 2 years ago
  
  e83de952
- docs(changelog): update change log with 1.3.0 · 003e371c
  mbruno authored 2 years ago
  
  003e371c
Nov 25, 2022
- refactor(config_template): add comment · 23813c47
  mbruno authored 2 years ago
  
  23813c47
- remove(envs/fastqsplitter_envs.yaml): unused conda env · b94ea707
  mbruno authored 2 years ago
  
  b94ea707
- Remove old config files · fbb112f4
  mbruno authored 2 years ago
  
  fbb112f4
- Remove unused rules · bc07ab2c
  mbruno authored 2 years ago
  
  bc07ab2c
- refactor(split_fastq.smk): replace fastqsplitter by seqkit split2 · 93e16435
  mbruno authored 2 years ago
  
  93e16435
- feat: change input and ouptut paths · 06248f49
  mbruno authored 2 years ago
  06248f49
- style(Snakefile): remove empty lines · 02fb3766
  mbruno authored 2 years ago
  
  02fb3766
- Update README: remove slack link · e0989364
  mbruno authored 2 years ago
  e0989364
Nov 23, 2022
- style(Snakemake): Add comments · 7ccb15bc
  mbruno authored 2 years ago
  
  7ccb15bc
Oct 14, 2022
- fix(checkpoint): problem with empty files · 09526b88
  mbruno authored 2 years ago
  
  09526b88
- refactor(table_assigned_sequences.smk): add {projet} and {marker} in output file name · 7154d251
  mbruno authored 2 years ago
  
  7154d251
- fix(ngsfilter.smk): MissingOutputException · 4242a6ce
  mbruno authored 2 years ago
  
  4242a6ce
- fix(ngsfilter.smk): ValueError: malformed node or string · 73c4c39a
  mbruno authored 2 years ago
  
  73c4c39a
Sep 09, 2022
- fix(get_targets): no longer returns the same file multiple times · 8c554ae1
  mbruno authored 2 years ago
  
  8c554ae1
- Update samples_to_runs.smk · c6ef807e
  mbruno authored 2 years ago
  
  c6ef807e
Sep 06, 2022
- feat(prepare_spygen): create all_samples.csv (required in the config file) · 4a8328ec
  mbruno authored 2 years ago
  
  4a8328ec
Sep 05, 2022
- Reverting to cdfa6fca · 865ca8f8
  mbruno authored 2 years ago
  
  View commits for tag 1.2.0 1.2.0
  
  865ca8f8
Sep 01, 2022
- commom.smk: remove print in get_internal_samples + remove commented function · e3091f67
  mbruno authored 2 years ago
  
  e3091f67
- fix(obisplit.smk): replace rule by checkpoint · 0c58351c
  mbruno authored 2 years ago
  0c58351c
Jul 18, 2022
- refactor(chunk_illuminapairend.smk, obisplit.smk): add key 'priority' · 922e421b
  mbruno authored 2 years ago
  
  922e421b
Jul 12, 2022
- fix(split_fastq.smk): change output · 32e6a86c
  mbruno authored 2 years ago
  32e6a86c
Apr 01, 2022
- ci(obisplit): add resources bigfile · 8b6b54da
  mbruno authored 3 years ago
  8b6b54da