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865ca8f8

Commit 865ca8f8 authored 2 years ago by mbruno

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Reverting to cdfa6fca

parent 8b6b54da

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Changes 15

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Snakefile 384 additions, 20 deletions

Snakefile
rules/chunk_illuminapairedend.smk 12 additions, 4 deletions

rules/chunk_illuminapairedend.smk
rules/clean_pcrerr_samples.smk 6 additions, 6 deletions

rules/clean_pcrerr_samples.smk
rules/custom_taxonomic_assignment.smk 6 additions, 4 deletions

rules/custom_taxonomic_assignment.smk
rules/dereplicate_runs.smk 8 additions, 6 deletions

rules/dereplicate_runs.smk
rules/dereplicate_samples.smk 1 addition, 1 deletion

rules/dereplicate_samples.smk
rules/goodlength_samples.smk 7 additions, 7 deletions

rules/goodlength_samples.smk
rules/illuminapairedend.smk 1 addition, 1 deletion

rules/illuminapairedend.smk
rules/remove_annotations.smk 14 additions, 13 deletions

rules/remove_annotations.smk
rules/remove_unaligned.smk 4 additions, 3 deletions

rules/remove_unaligned.smk
rules/rm_internal_samples.smk 7 additions, 5 deletions

rules/rm_internal_samples.smk
rules/sort_abundance_assigned_sequences.smk 7 additions, 6 deletions

rules/sort_abundance_assigned_sequences.smk
rules/split_fastq.smk 5 additions, 3 deletions

rules/split_fastq.smk
rules/table_assigned_sequences.smk 9 additions, 9 deletions

rules/table_assigned_sequences.smk
rules/taxonomic_assignment.smk 8 additions, 33 deletions

rules/taxonomic_assignment.smk

with 479 additions and 121 deletions

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