Commits · 865ca8f8f062b224526932d502429c49e00912ef · edna / snakemake_rapidrun_obitools

Sep 05, 2022
- Reverting to cdfa6fca · 865ca8f8
  mbruno authored 2 years ago
  
  View commits for tag 1.2.0 1.2.0
  
  865ca8f8
Apr 01, 2022
- ci(obisplit): add resources bigfile · 8b6b54da
  mbruno authored 3 years ago
  8b6b54da
- Merge branch 'develop' of... · 60d83b52
  mbruno authored 3 years ago
  60d83b52
- ci(goodlength_samples): add parameter priority · 811d7f2d
  mbruno authored 3 years ago
  811d7f2d
Feb 21, 2022
- Update config_template.yaml · 3f1c6ded
  mbruno authored 3 years ago
  
  3f1c6ded
- Update config_template.yaml · 5219a389
  mbruno authored 3 years ago
  
  5219a389
- Update config_template.yaml · a5cb0730
  mbruno authored 3 years ago
  
  a5cb0730
Feb 15, 2022
- fix(write_demultiplex_files.py): correct minor typo in code · ee5cd976
  mbruno authored 3 years ago
  
  ee5cd976
Feb 14, 2022
- refactor(config): add a config file template · 968582ee
  mbruno authored 3 years ago
  
  968582ee
- refactor(taxonomic_assignment): edit custom_taxonomic_assignment rule · e1277c3a
  mbruno authored 3 years ago
  
  e1277c3a
Feb 11, 2022
- refactor(snakefile/rules): clean Snakefile + reduce number of output files · 7741e00a
  mbruno authored 3 years ago
  7741e00a
Nov 02, 2021
- Update config_test_rapidrun.yaml · cdfa6fca
  vmarques authored 3 years ago
  
  cdfa6fca
Apr 27, 2021
- update changelog · 40e285c2
  peguerin authored 4 years ago
  
  40e285c2
- modify custombdr config params · a25120be
  peguerin authored 4 years ago
  
  a25120be
- fix custombdr config · aaa5c701
  peguerin authored 4 years ago
  
  aaa5c701
- fix path of folder results split_fastq_by_sample rule output · fd71f81a
  peguerin authored 4 years ago
  
  fd71f81a
Apr 08, 2021
- readme update · 953a7eaa
  peguerin authored 4 years ago
  
  953a7eaa
- readme update · 0a10d34c
  peguerin authored 4 years ago
  
  0a10d34c
- readme update · f16887b8
  peguerin authored 4 years ago
  
  f16887b8
- set to False custom taxonomy · be9d281c
  peguerin authored 4 years ago
  
  be9d281c
Apr 07, 2021
- custom reference database taxonomic assignment rule · f656bb80
  peguerin authored 4 years ago
  
  f656bb80
- scripts link projmarkrun to projmarkrun_custom · dfed488b
  peguerin authored 4 years ago
  
  dfed488b
- test config with custom reference database input · a0cb5aee
  peguerin authored 4 years ago
  
  a0cb5aee
- custom reference database · de2524ae
  peguerin authored 4 years ago
  
  de2524ae
Feb 11, 2021
- fix SettingWithCopyWarning pandas dataframe · 747a0c8c
  peguerin authored 4 years ago
  
  747a0c8c
- change path of files · 6688a0b5
  peguerin authored 4 years ago
  
  6688a0b5
Feb 10, 2021
- gitignore update · ab5d8156
  peguerin authored 4 years ago
  
  ab5d8156
- init folder test · 902f77ca
  peguerin authored 4 years ago
  
  902f77ca
- gitignore update · f7d37e70
  peguerin authored 4 years ago
  
  f7d37e70
- clean test folder · 8cc35c3c
  peguerin authored 4 years ago
  
  8cc35c3c
- update changelog · e140e9a7
  peguerin authored 4 years ago
  
  e140e9a7
- update gitignore · 277a0cf5
  peguerin authored 4 years ago
  
  277a0cf5
- one single command · cfc6059e
  peguerin authored 4 years ago
  
  cfc6059e
- add config for test data · 901b9f5e
  peguerin authored 4 years ago
  
  901b9f5e
- the whole workflow is into one single snakefile · 5173e85b
  peguerin authored 4 years ago
  
  5173e85b
- remove useless script clean.sh · 2ee63776
  peguerin authored 4 years ago
  
  2ee63776
- reorganise files · 36147d6f
  peguerin authored 4 years ago
  
  36147d6f
- update license · 02887f7c
  peguerin authored 4 years ago
  
  02887f7c
- scripts merge samples into runs · 2ae93640
  peguerin authored 4 years ago
  
  2ae93640
- clean logs · 0cb41596
  peguerin authored 4 years ago
  
  0cb41596