Initial commit

.gitignore

00-scripts/.gitkeep

00-scripts/bwa_mem_align_reads_PE.sh

00-scripts/rename_files.sh

00-scripts/step1.sf

00-scripts/step2.sf

00-scripts/step3.sf

00-scripts/step4.sf

01-info_files/.gitkeep

01-info_files/barcodes.txt

01-info_files/config.yaml

01-info_files/diplodus_infos.csv

01-info_files/diplodus_population_map.txt

01-info_files/mullus_infos.csv

01-info_files/mullus_population_map.txt

01-info_files/serran_infos.csv

01-info_files/serran_population_map.txt

02-raw/.gitkeep

03-samples/.gitkeep

04-all_samples/.gitkeep