Commits · 1d723ba2d506afda7e192a0bbf20794f2ff89faf · remy / OrthoFinder

Nov 29, 2019
- debug commented - just in case · 1d723ba2
  remy authored 5 years ago
  
  1d723ba2
- jSpeciesOpen is not needed as it is the same as iSpeciesOpen · 3605eb72
  remy authored 5 years ago
  
  3605eb72
- try/except in scnorm commented b/c of long duration in computing new... · 54b335a3
  remy authored 5 years ago
  54b335a3
Nov 28, 2019
- renaming NF option to NZ and an info about time consumption. Adding an error margin in the compute · 3f21ddda
  remy authored 5 years ago
  
  3f21ddda
Nov 26, 2019
- debuging retrieving plots from the fitting curve · a55e1a7f
  remy authored 5 years ago
  
  a55e1a7f
- no more error, but still does not work · b6ee41a7
  remy authored 5 years ago
  
  b6ee41a7
- adding a specific option to fix zeros values for self-hits... · 3bf5d4bb
  remy authored 5 years ago
  
  3bf5d4bb
Nov 25, 2019
- will fix scores in a new loop. Maybe need another option qFixnormalizedzeros · ca9e3706
  remy authored 5 years ago
  
  ca9e3706
- sys was not imported · 18be62c9
  remy authored 5 years ago
  
  18be62c9
- moving row compute to the scnorm class · 448e3da0
  remy authored 5 years ago
  
  448e3da0
Nov 24, 2019
- message error when encountering 0.0 Norm score · ac298ea6
  remy authored 5 years ago
  
  ac298ea6
- 0.0 ... · ea3105bb
  remy authored 5 years ago
  
  ea3105bb
- not the right way to do fix this · 1471cfc7
  remy authored 5 years ago
  
  1471cfc7
- update code to load a new class from file · c96bb13c
  remy authored 5 years ago
  
  c96bb13c
- fitting curve modified · 2284c24d
  remy authored 5 years ago
  
  2284c24d
Nov 22, 2019
- adding fitting curve · b31af64d
  remy authored 5 years ago
  
  b31af64d
- adding comments · e5a69ed1
  remy authored 5 years ago
  
  e5a69ed1
Nov 12, 2019
- error in index · 3912fe8e
  remy authored 5 years ago
  
  3912fe8e
- error in index · 02cc68e3
  remy authored 5 years ago
  
  02cc68e3
- Merge branch 'master' of https://gitlab.mbb.univ-montp2.fr/remy/orthofinder · 79fbf64a
  remy authored 5 years ago
  
  79fbf64a
- more explicit error message · ccb7a5f2
  remy authored 5 years ago
  
  ccb7a5f2
- check ipsecies · c2e2a5fd
  remy authored 5 years ago
  
  c2e2a5fd
- tempfile was not correctly flushed and closed · 4e0858b7
  remy authored 5 years ago
  
  4e0858b7
- renaming a function · 2bfe9705
  remy authored 5 years ago
  
  2bfe9705
Nov 11, 2019
- tempfile was nt created at the right place · 544a328b
  remy authored 5 years ago
  
  544a328b
- still some bugs but nevertheless it gives some results · 06675bb2
  remy authored 5 years ago
  
  06675bb2
- bugs fixed · 5862116d
  remy authored 5 years ago
  
  5862116d
- Normalize is not compatible with other options. It is a one shot operation · a681390d
  remy authored 5 years ago
  
  a681390d
Nov 10, 2019
- adding method to add a new csv file based on normalized scores · 17f9044b
  remy authored 5 years ago
  
  17f9044b
Nov 08, 2019
- missing parenthesis · eb517248
  remy authored 5 years ago
  
  eb517248
- adding necessary addtionnal conditions for Normalize option · bc24ca34
  remy authored 5 years ago
  
  bc24ca34
- Normalize option · 389d0934
  remy authored 5 years ago
  
  389d0934
- adding a DoNormalize function · 02f4a6ba
  remy authored 5 years ago
  
  02f4a6ba
Nov 07, 2019
- adding a normalize option · a6e7f5a0
  remy authored 5 years ago
  
  a6e7f5a0
Nov 06, 2019
- Support python 2.7 & 3+, resolves #270 · d9dd44c9
  David Emms authored 5 years ago
  
  d9dd44c9
- Towards support for python 3 · 9cc74166
  David Emms authored 5 years ago
  
  9cc74166
Nov 04, 2019
- Don't keep blank lines in input fasta files, resolves #275 · b2b39d34
  David Emms authored 5 years ago
  
  b2b39d34
- Check for good accessions at start of run, resolves #298 · 5737d1a5
  David Emms authored 5 years ago
  
  5737d1a5
- Allow for failing MSA, resolves #298 · f1c69e79
  David Emms authored 5 years ago
  
  f1c69e79
Oct 22, 2019
- Only open ortholog files once to avoid sophos slowdown · 87d3c77f
  David Emms authored 5 years ago
  
  View commits for tag 2.3.7 2.3.7
  
  87d3c77f