Commits · b8e756a4d18f750e02f449cfeb8c9aa85ecf9cfe · mmassaviol / WAWmassaviol

Nov 09, 2021
- Add filters to DEseq2 · 5f2b1342
  khalid authored 3 years ago
  
  5f2b1342
Oct 28, 2021
- change json dir · ff3a400d
  khalid authored 3 years ago
  
  ff3a400d
- Now save workflow json in results dir after run · 39378446
  khalid authored 3 years ago
  
  39378446
- Now save workflow json in results dir after run · e027e21a
  khalid authored 3 years ago
  
  e027e21a
Oct 20, 2021
- Show absolute path to results in multiqc report · 1fe90db5
  khalid authored 3 years ago
  
  1fe90db5
- Show mismach in blastn results · 4637e3ab
  khalid authored 3 years ago
  
  4637e3ab
Oct 19, 2021
- Add a way to refresh multiqc_report to override navigator cache · 23bf0b19
  khalid authored 3 years ago
  
  23bf0b19
Apr 22, 2021
- Deal with raw_bams · 6c0e4f2f
  khalid authored 4 years ago
  
  6c0e4f2f
Mar 05, 2021
- Add constraint on sample and id wildcards · 97d7dbe3
  khalid authored 4 years ago
  
  97d7dbe3
Mar 04, 2021
- Debug step_outputs for null steps · 504b04fc
  khalid authored 4 years ago
  
  504b04fc
Mar 02, 2021
- Change blast ftp site for download · 1496c850
  khalid authored 4 years ago
  
  1496c850
Oct 16, 2020
- Typo · a73110f5
  mmassaviol authored 4 years ago
  
  a73110f5
Oct 15, 2020
- Writing doc · 7bcbb484
  mmassaviol authored 4 years ago
  
  7bcbb484
Oct 13, 2020
- Update Genome_Profile workflow · 6ef131d7
  mmassaviol authored 4 years ago
  
  6ef131d7
- Remove workflow_outputs fun (same as step_outputs) · 1398c177
  mmassaviol authored 4 years ago
  
  1398c177
Oct 01, 2020
- Update workflow · ce94819b
  mmassaviol authored 4 years ago
  
  ce94819b
Sep 29, 2020
- Update Virus_Assembler_Megahit workflow · 4d2259ed
  mmassaviol authored 4 years ago
  
  4d2259ed
Sep 28, 2020
- Update mitoz rules · 864b80d7
  mmassaviol authored 4 years ago
  
  864b80d7
Sep 22, 2020
- Update workflow · 1dc4ac4e
  mmassaviol authored 4 years ago
  
  1dc4ac4e
Sep 21, 2020
- Update onsuccess/error to remove workflow.running · fba2e186
  mmassaviol authored 4 years ago
  
  fba2e186
- Merge · 555d0e48
  jlopez authored 4 years ago
  
  555d0e48
- Add json version · 303c0a41
  jlopez authored 4 years ago
  
  303c0a41
Sep 18, 2020
- Remove unused parameters · 3a7b2815
  mmassaviol authored 4 years ago
  
  3a7b2815
- Update Genome_Profile workflow · 539c9516
  mmassaviol authored 4 years ago
  
  539c9516
Sep 17, 2020
- Update RNAseq workflow · 8a076abc
  mmassaviol authored 4 years ago
  
  8a076abc
Sep 10, 2020
- Debug cutadapt output name · 4a1eb263
  mmassaviol authored 4 years ago
  
  4a1eb263
- Debug variant calling outputs · e6cc2dba
  mmassaviol authored 4 years ago
  
  e6cc2dba
- Update input functions (separate SE PE) · b2e069c8
  mmassaviol authored 4 years ago
  
  b2e069c8
Sep 08, 2020
- Finalise yaml validation files and scripts · bcd03c5c
  mmassaviol authored 4 years ago
  
  bcd03c5c
- Fix toolname · dbfcc9fa
  mmassaviol authored 4 years ago
  
  dbfcc9fa
Sep 07, 2020
- Add workflow scheme and validation function · 106e072b
  mmassaviol authored 4 years ago
  
  106e072b
Sep 02, 2020
- Add trimming step to virus_assembler_megahit · 1bcfdf36
  mmassaviol authored 4 years ago
  
  1bcfdf36
- Update cutadapt input functions · d74c831b
  mmassaviol authored 4 years ago
  
  d74c831b
- Update variantcalling workflow · 42d59628
  mmassaviol authored 4 years ago
  
  42d59628
- Update cutadapt inputs · 99f91ef8
  mmassaviol authored 4 years ago
  
  99f91ef8
Aug 25, 2020
- Debug by_step workflows inputs · 5f9ec285
  mmassaviol authored 4 years ago
  
  5f9ec285
- Update radseqdenovo workflow and tools · 92baa46a
  mmassaviol authored 4 years ago
  
  92baa46a
- Add global data · 83e72a3e
  jlopez authored 4 years ago and mmassaviol committed 4 years ago
  
  83e72a3e
- Update megahit input functions · b316d0de
  mmassaviol authored 4 years ago
  
  b316d0de
- Add microbial_metagenome workflow · d9299399
  mmassaviol authored 4 years ago
  
  d9299399