Commits · b8e756a4d18f750e02f449cfeb8c9aa85ecf9cfe · mmassaviol / WAWmassaviol

Dec 03, 2021
- Add snap mapper · e958d8de
  khalid authored 3 years ago
  
  e958d8de
Dec 01, 2021
- Add raw indexing · a37db254
  khalid authored 3 years ago
  
  a37db254
Nov 27, 2021
- mistyping in fast5_dir · 48053511
  khalid authored 3 years ago
  
  48053511
Nov 26, 2021
- Add fast5_dir type · 6c982e34
  khalid authored 3 years ago
  
  6c982e34
Nov 24, 2021
- compact Docker_base · f04b1a3a
  khalid authored 3 years ago
  
  f04b1a3a
Nov 23, 2021
- Add a raw_contigs · b85dba69
  khalid authored 3 years ago
  
  b85dba69
Oct 26, 2021
- Test if results dir exists · f00f308a
  khalid authored 3 years ago
  
  f00f308a
Oct 25, 2021
- better handling of raw counts file in deseq2 · 61a794ee
  khalid authored 3 years ago
  
  61a794ee
Oct 15, 2021
- Add raw hisat2_index · 3e27cabb
  khalid authored 3 years ago
  
  3e27cabb
Oct 13, 2021
- Add a PE_Mark variable for pair-end raw_reads · afd4bd7c
  khalid authored 3 years ago
  
  afd4bd7c
Oct 08, 2021
- Add raw_tsv input · 22ae3904
  khalid authored 3 years ago
  
  22ae3904
Oct 04, 2021
- debug raw_gff3 · 017cb318
  khalid authored 3 years ago
  
  017cb318
- debug raw_gff3 · b168a22f
  khalid authored 3 years ago
  
  b168a22f
- debug raw_gff3 · e7dd4dff
  khalid authored 3 years ago
  
  e7dd4dff
- Add a gff3 raw reader · a18cc47b
  khalid authored 3 years ago
  
  a18cc47b
Aug 31, 2021
- Add a single vcf file raw input · 54abf568
  khalid authored 3 years ago
  
  54abf568
- Add way to deal with gds format for snp variants · cc663b0e
  khalid authored 3 years ago
  
  cc663b0e
Aug 27, 2021
- remove SE PE from raw_illumina_dir · 2b781c9a
  khalid authored 3 years ago
  
  2b781c9a
- raw_illumina name change · 96d1f32e
  khalid authored 3 years ago
  
  96d1f32e
- raw_illumina name change · 33407e55
  khalid authored 3 years ago
  
  33407e55
- Interop typos · d165369d
  khalid authored 3 years ago
  
  d165369d
- Changes to get a raw dir of Interop files · ee8490a4
  khalid authored 3 years ago
  
  ee8490a4
Aug 11, 2021
- Add processTagged option to create locus from indexed reads with variable tags size · bd9258ed
  khalid authored 3 years ago
  
  bd9258ed
Aug 06, 2021
- popmap raw files · 48a8e94f
  khalid authored 3 years ago
  
  48a8e94f
Aug 03, 2021
- Radsex · 50691174
  abensaid authored 3 years ago
  
  50691174
May 07, 2021
- Add necessary file to handle comparison of a list files in a directory · c55fe75c
  khalid authored 3 years ago
  
  c55fe75c
May 04, 2021
- Add raw_index code · 38bbfb19
  khalid authored 4 years ago
  
  38bbfb19
Apr 22, 2021
- Deal with raw_bams · 6c0e4f2f
  khalid authored 4 years ago
  
  6c0e4f2f
Mar 02, 2021
- Change blast ftp site for download · 1496c850
  khalid authored 4 years ago
  
  1496c850
Oct 27, 2020
- Add raw_fasta · d97ea137
  mmassaviol authored 4 years ago
  
  d97ea137
Oct 16, 2020
- Ignore hidden files · ca0d288c
  mmassaviol authored 4 years ago
  
  ca0d288c
Oct 15, 2020
- Update bam detection (ignore .bai) · d5b1a1b5
  mmassaviol authored 4 years ago
  
  d5b1a1b5
- Add raw_vcf input · 429dee83
  mmassaviol authored 4 years ago
  
  429dee83
May 25, 2020
- Add T-lex3 workflow and raw_read_dir type · 28b28954
  mmassaviol authored 4 years ago
  
  28b28954
Mar 12, 2020
- Add raw_bams · 3a758b01
  mmassaviol authored 5 years ago
  
  3a758b01
Feb 11, 2020
- Update SeOrPe default · 6ad358e7
  mmassaviol authored 5 years ago
  
  6ad358e7
Jan 20, 2020
- Update raw_inputs system · ba96f06c
  mmassaviol authored 5 years ago
  
  ba96f06c
Jan 09, 2020
- Update long_read_assembly (add raw_long_reads) · 0b96bd1a
  mmassaviol authored 5 years ago
  
  0b96bd1a
- Remove get_samples and add raw_inputs system · 099ecf64
  mmassaviol authored 5 years ago
  
  099ecf64