Merge branch 'master' into squeezemeta

Docker_base/Dockerfile

deploys/Readme.md

deploys/install.sh

deploys/waw_workflow.qsub

generate_multiqc_config.py

generate_workflow.py

raw_inputs/raw_bams.py

raw_inputs/raw_fasta.py

raw_inputs/raw_long_reads.py

raw_inputs/raw_reads.py

raw_inputs/raw_tsv.py

raw_inputs/raw_vcf.py

raw_inputs/raw_vcfsinDir.py

tools/blastn/blastn.rule.snakefile

tools/deseq2/deseq2.rule.snakefile

tools/deseq2/deseq2.script.R

tools/deseq2/deseq2.yaml

tools/edger/edger.yaml

tools/fastqc/fastqc.rule.snakefile

tools/igv_visualize/igv_visualize.yaml