add version of minimap producing bam file

...imap2_reference_bam/minimap2_reference_bam.rule.snakefile

tools/minimap2_reference_bam/minimap2_reference_bam.yaml

tools/mitoz_annotate/mitoz_annotate.yaml

tools/mitoz_assemble/mitoz_assemble.yaml

tools/mitoz_filter/mitoz_filter.yaml

tools/mitoz_findmitoscaf/mitoz_findmitoscaf.yaml