Commits · fff4157d9f979c67659df44ccefc777f029e6125 · mbb / waw

Mar 06, 2025
- Adapt mitoz annotate to new version · fff4157d
  bpenaud authored 1 month ago
  
  fff4157d
Feb 17, 2025
- Add info in readme dada2 · 0edf2429
  bpenaud authored 2 months ago
  
  0edf2429
Feb 11, 2025
- Add readme for dada2 workflow and enhance the documentation of each step of... · eb3b98d2
  bpenaud authored 2 months ago
  eb3b98d2
Dec 18, 2024
- Correction bug that can happen on sag; Correction bug on download FROGS... · d6b8911a
  bpenaud authored 4 months ago
  d6b8911a
Dec 06, 2024
- Correction bug name not identic between yaml and snakefile · 92a23968
  bpenaud authored 4 months ago
  
  92a23968
Nov 21, 2024
- Add metadata and doc to metabarcoding tool. Correct bug on FROGS · a5b3c0ef
  bpenaud authored 5 months ago
  
  a5b3c0ef
Oct 28, 2024
- Modify contaminant code in Frogs filter OTU · b865a3dd
  bpenaud authored 6 months ago
  
  b865a3dd
Oct 25, 2024
- Correction bug on Frogs contaminant; Modification of the Frogs workflow · 7dfb7c41
  bpenaud authored 6 months ago
  
  7dfb7c41
Oct 23, 2024
- Merge branch 'master' of https://gitlab.mbb.univ-montp2.fr/mbb/waw · 37cdd3bb
  bpenaud authored 6 months ago
  
  37cdd3bb
- Add tools for metagenomic pipeline; Correction bug in metabarcoding tools · edac68bc
  bpenaud authored 6 months ago
  
  edac68bc
Sep 23, 2024
- Test if files exists before cp · 7f702c81
  khalid authored 7 months ago
  
  7f702c81
- Add a dummy file for generate_workflow.py step · 645bfa9a
  khalid authored 7 months ago
  
  645bfa9a
Sep 18, 2024
- Change dada2 workflow · 5569664d
  bpenaud authored 7 months ago
  
  5569664d
- Correction bug for metabarcoding tools · 01626ecd
  bpenaud authored 7 months ago
  
  01626ecd
Sep 17, 2024
- Correction file type for fastq · 5a85a1cc
  bpenaud authored 7 months ago
  
  5a85a1cc
- Correction tools for metagenomic analysis. Append FeaturesCount tool · e087212d
  bpenaud authored 7 months ago
  
  e087212d
Sep 05, 2024
- Correction bug in FROGS pipeline · 651718c9
  bpenaud authored 7 months ago
  
  651718c9
- Add eggNog tools and featureCount Tools · b4de0862
  bpenaud authored 7 months ago
  
  b4de0862
Aug 28, 2024
- Modification of function to save download from different tools · 8b4761eb
  bpenaud authored 8 months ago
  
  8b4761eb
- Correction bug on CAT suite tools · 12f00a3b
  bpenaud authored 8 months ago
  
  12f00a3b
Aug 21, 2024
- Add Software suite CAT,BAT and RAT for metagenomic analysis · 07759e89
  bpenaud authored 8 months ago
  
  07759e89
- Modification about release on PE and SE read type format · 6464f35f
  bpenaud authored 8 months ago
  
  6464f35f
Aug 07, 2024
- Add pyrodigal tool, correction bug in decontamination FROGS and phyloseq FROGS · b1a79276
  bpenaud authored 8 months ago
  
  b1a79276
Jul 31, 2024
- Merge branch 'master' of https://gitlab.mbb.univ-montp2.fr/mbb/waw · e832a0d2
  khalid authored 8 months ago
  
  e832a0d2
- Add reads_SE and reads_PE · 102f611a
  khalid authored 8 months ago
  
  102f611a
Jun 20, 2024
- Correction bug on multiple tools, we had a wildcards bug when workflow began... · c7c17a7e
  bpenaud authored 10 months ago
  c7c17a7e
Jun 13, 2024
- Add multiple tool to generate MAG in metagenomic analysis · 0a3d9449
  bpenaud authored 10 months ago
  
  0a3d9449
Jun 11, 2024
- Force nPRIMER_OPT_SIZE to be >= to PRIMER_MIN_SIZE · 1caf6d58
  khalid authored 10 months ago
  
  1caf6d58
- Add some params to primer3 input file · a1e5144c
  khalid authored 10 months ago
  
  a1e5144c
- Add some params to primer3 input file · ddb32304
  khalid authored 10 months ago
  
  ddb32304
- Add some params to primer3 input file · cb9ce578
  khalid authored 10 months ago
  
  cb9ce578
May 31, 2024
- Add workflow to construct linkage map with LepMap3 · 3a9faaa2
  bpenaud authored 10 months ago
  
  3a9faaa2
May 30, 2024
- Reverse complement primer right sequence before stiching · 99703afd
  khalid authored 10 months ago
  
  99703afd
May 23, 2024
- Add a dummy test file · 3d285f8d
  khalid authored 11 months ago
  
  3d285f8d
- test if bam is already indexed · a3799e52
  khalid authored 11 months ago
  
  a3799e52
May 21, 2024
- Use the same conda env as version without bams dir · c4290444
  khalid authored 11 months ago
  
  c4290444
- A version using a bams dir · 48d81f0f
  khalid authored 11 months ago
  
  48d81f0f
- Merge branch 'master' of https://gitlab.mbb.univ-montp2.fr/mbb/waw · ca0f1e6e
  khalid authored 11 months ago
  
  ca0f1e6e
- A version using a bams dir · 4d73a439
  khalid authored 11 months ago
  
  4d73a439
Apr 29, 2024
- Add Lepmap tools a,d correct some bug. · 8a152433
  bpenaud authored 1 year ago
  
  8a152433