Merge branch 'master' of gitlab.mbb.univ-montp2.fr:mbb/modulefiles

envfiles/R/3.5.3.modified

+#%Module######################################################################
+#
+# 20210520 R-3.5.3 updated modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-3.5.3"
+puts stderr "The program R-3.5.3"
+puts stderr "is added to PATH."
+}
+
+set rel [uname release]
+global prodlist
+set    prodlist { singularity/3.7.3 }
+
+
+set is_module_rm [module-info mode remove]
+
+catch {set modulehomes $env(MODULEPATH)}
+if { [ module-info mode load ] } {
+  foreach prod $prodlist {
+    foreach mfilehome [ split $modulehomes :] {
+      if { [file exists $mfilehome/$prod] } {
+        module load $prod
+      }
+    }
+  }
+}
+
+if { [ module-info mode remove ] } {
+  foreach prod $prodlist {
+    foreach mfilehome [ split $modulehomes :] {
+      if { [file exists $mfilehome/$prod] } {
+        module unload $prod
+	unset-alias R
+	unset-alias Rscript
+      }
+    }
+  }
+}
+
+
+set R_LEVEL 3.5.3
+
+# aliases not passing through SGE. Would need to source a file...
+prepend-path PATH  /share/apps/sing-images/3.7.3
+
+append-path  PE_PRODUCT_LIST  R-$R_LEVEL

envfiles/R/4.0.5

+#%Module######################################################################
+#
+# 20210413 R-4.0.5 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-4.0.5"
+puts stderr "The program R-4.0.5"
+puts stderr "is added to PATH."
+}
+
+set rel [uname release]
+global prodlist
+set    prodlist { singularity/3.7.3 }
+
+
+set is_module_rm [module-info mode remove]
+
+catch {set modulehomes $env(MODULEPATH)}
+if { [ module-info mode load ] } {
+  foreach prod $prodlist {
+    foreach mfilehome [ split $modulehomes :] {
+      if { [file exists $mfilehome/$prod] } {
+        module load $prod
+      }
+    }
+  }
+}
+
+if { [ module-info mode remove ] } {
+  foreach prod $prodlist {
+    foreach mfilehome [ split $modulehomes :] {
+      if { [file exists $mfilehome/$prod] } {
+        module unload $prod
+	unset-alias R
+	unset-alias Rscript
+      }
+    }
+  }
+}
+
+
+set R_LEVEL 4.0.5
+
+# aliases not passing through SGE. Would need to source a file...
+prepend-path PATH  /share/apps/sing-images/3.7.3
+
+append-path  PE_PRODUCT_LIST  R-$R_LEVEL

envfiles/golang/1.14

+#%Module######################################################################
+#
+# golang 1.14 20210412
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use Go (golang) version 1.14"
+puts stderr "Please adjust your GOPATH because Go checker does not"
+puts stderr "like the tilde character '~'"
+puts stderr "The program Go 1.14"
+puts stderr "is added to PATH."
+}
+
+set is_module_rm [module-info mode remove]
+
+unsetenv LD_LIBRARY_PATH
+set GO_LEVEL 1.14
+#set GO_SUBLVL 1
+set GO_CURPATH /share/apps/bin/golang/$GO_LEVEL/go
+
+set userhome $env(HOME)
+
+prepend-path PATH             $GO_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $GO_CURPATH/lib/
+prepend-path MANPATH          $GO_CURPATH/share/man
+setenv GOPATH	$userhome/go
+setenv GOROOT	$GO_CURPATH
+setenv GO111MODULE	off
+
+append-path  PE_PRODUCT_LIST  Golang.$GO_LEVEL

envfiles/golang/1.16.3

+#%Module######################################################################
+#
+# golang 1.16.3 20210412
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use Go (golang) version 1.16.3"
+puts stderr "Please adjust your GOPATH because Go checker does not"
+puts stderr "like the tilde character '~'"
+puts stderr "The program Go 1.16.3"
+puts stderr "is added to PATH."
+}
+
+set is_module_rm [module-info mode remove]
+
+unsetenv LD_LIBRARY_PATH
+set GO_LEVEL 1.16
+set GO_SUBLVL 3
+set GO_CURPATH /share/apps/bin/golang/$GO_LEVEL.$GO_SUBLVL/go
+
+set userhome $env(HOME)
+
+prepend-path PATH             $GO_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $GO_CURPATH/lib/
+prepend-path MANPATH          $GO_CURPATH/share/man
+setenv GOPATH	$userhome/go
+setenv GOROOT	$GO_CURPATH
+setenv GO111MODULE	off
+
+append-path  PE_PRODUCT_LIST  Golang.$GO_LEVEL.$GO_SUBLVL

envfiles/singularity/3.7.3

+#%Module######################################################################
+#
+# 20210412 singularity 3.7.3 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use singularity 3.7.3"
+puts stderr "The program singularity 3.7.3"
+puts stderr "is added to PATH."
+}
+
+set is_module_rm [module-info mode remove]
+
+unsetenv LD_LIBRARY_PATH
+set SING_LEVEL 3.7.3
+set SING_CURPATH /share/apps/bin/singularity/$SING_LEVEL/
+set SING_IMG /share/apps/sing-images/$SING_LEVEL/
+
+prepend-path PATH       $SING_CURPATH/bin/
+prepend-path PATH       $SING_IMG
+prepend-path LD_LIBRARY_PATH  $SING_CURPATH/lib/
+prepend-path MANPATH      $SING_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  Singularity.$SING_LEVEL