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Commit 9b3b8e55 authored by khalid's avatar khalid
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Change container name

parent 7d893080
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......@@ -21,8 +21,8 @@ configFile=$3
cores=$4
#if we must build the image from docker image
singularity build long_read_assembly_latest.simg docker://mmassaviol/long_read_assembly:latest
singularity build rnaseqde.simg docker://mbbteam/rnaseqde:latest
#Run the workflow in cmd line
singularity exec -B $dataDir:/Data -B $resultsDir:/Results long_read_assembly_latest.simg snakemake -s /workflow/Snakefile --configfile $configFile --cores $cores
\ No newline at end of file
singularity exec -B $dataDir:/Data -B $resultsDir:/Results rnaseqde.simg snakemake -s /workflow/Snakefile --configfile $configFile --cores $cores
\ No newline at end of file
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