Temporary access to GAPeDNA

This repo allows sharing and testing of our web-app interface investigating database gaps in eDNA. After paper acceptance, the app will be deposited on a server for easy access thought a web link.

Display the app

1. Using GitHub

You can load the app just by calling the GitHub repo in a local R session. At the moment, it takes a long time to load (>5-10 min):

library('shiny')
runGitHub("GAPeDNA", "virginiemarques")

2. On your local computer

Alternatively, you first need to download the repo, then launch R. Here are the command to run on the terminal (Linux/Mac only):

git clone https://github.com/virginiemarques/GAPeDNA
cd GAPeDNA/
R

After, you need to load shiny to run the app in local inside a R session:

library('shiny')
runApp()

New taxa addition

To propose a new taxon to be added in GAPeDNA, please file an issue labelled 'enhancement' in this repo stating the wanted group, and provide the necessary informations:

• primers amplifying the taxon, or a list of species amplified by each primer if you already performed the virtual PCRs
• one or several global spatialized checklist with relevant resolution

If the information is correct, the app will be updated to implement your suggestion

Demonstration