From 7a51b5c0c0abef3ee50bae46085976c0cd098bbc Mon Sep 17 00:00:00 2001
From: peguerin <pierre-edouard.guerin@cefe.cnrs.fr>
Date: Wed, 24 Oct 2018 12:14:53 +0200
Subject: [PATCH] Update README.md
---
README.md | 27 ++++++++++++++-------------
1 file changed, 14 insertions(+), 13 deletions(-)
diff --git a/README.md b/README.md
index e620ced..eb5f68c 100644
--- a/README.md
+++ b/README.md
@@ -35,6 +35,7 @@ You must install the following softwares and packages :
- [SNAKEMAKE 5.3.0](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html)
* Check version and if the program is correctly installed by typing :
+
```
snakemake --version
## should give you the output
@@ -76,19 +77,19 @@ Version: 0.7.17-r1188
* Download `htslib` and `samtools` at : http://www.htslib.org/download/
* Building each desired package from source is very simple:
-```
-cd htslib-1.x
-./configure --prefix=/where/to/install
-make
-make install
-cd ..
-## and similarly for samtools :
-cd samtools-1.x
-./configure --prefix=/where/to/install
-make
-make install
-```
- * Check version and if programs are correctly installed by typing :
+ ```
+ cd htslib-1.x
+ ./configure --prefix=/where/to/install
+ make
+ make install
+ cd ..
+ ## and similarly for samtools :
+ cd samtools-1.x
+ ./configure --prefix=/where/to/install
+ make
+ make install
+ ```
+ * Check version and if programs are correctly installed by typing :
```
samtools --version
--
GitLab