diff --git a/README.md b/README.md index a7116423f02a34dc4fa0e815f3ee98cadb00ca48..c60b727bd149554b8de20982ba57b5ec0f6d03ea 100644 --- a/README.md +++ b/README.md @@ -34,7 +34,7 @@ blablabla You must install the following softwares and packages : - [SNAKEMAKE 5.3.0](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html) -Check version and if the program is correctly installed by typing : + * Check version and if the program is correctly installed by typing : ``` snakemake --version ## should give you the output @@ -42,7 +42,7 @@ snakemake --version ``` - [STACKS 2.0b](http://catchenlab.life.illinois.edu/stacks/) -Check version and if programs are correctly installed by typing : + * Check version and if programs are correctly installed by typing : ``` process_radtags --version clone_filter --version @@ -53,7 +53,7 @@ populations --version ``` - [BWA 0.7.17](https://icb.med.cornell.edu/wiki/index.php/Elementolab/BWA_tutorial) -Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/ + * Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/ ``` tar -xvf bwa-x.x.x.tar.bz2 cd bwa-x.x.x @@ -61,7 +61,7 @@ cd bwa-x.x.x make make install ``` -Check version and if programs are correctly installed by typing : + * Check version and if programs are correctly installed by typing : ``` bwa ## should give you the output @@ -69,9 +69,9 @@ Program: bwa (alignment via Burrows-Wheeler transformation) Version: 0.7.17-r1188 ... ``` -- [SAMTOOLS](http://www.htslib.org/) -Download `htslib` and `samtools` at : http://www.htslib.org/download/ -Building each desired package from source is very simple: +- [SAMTOOLS 1.9 ](http://www.htslib.org/) + * Download `htslib` and `samtools` at : http://www.htslib.org/download/ + * Building each desired package from source is very simple: ``` cd htslib-1.x ./configure --prefix=/where/to/install @@ -84,7 +84,7 @@ cd samtools-1.x make make install ``` -Check version and if programs are correctly installed by typing : + * Check version and if programs are correctly installed by typing : ``` samtools --version ## should give you the output