From 4573db1ca8140dac88635ec3f9aa1de922a0fe48 Mon Sep 17 00:00:00 2001
From: peguerin <pierre-edouard.guerin@cefe.cnrs.fr>
Date: Wed, 24 Oct 2018 12:13:53 +0200
Subject: [PATCH] Update README.md
---
README.md | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/README.md b/README.md
index c60b727..e620ced 100644
--- a/README.md
+++ b/README.md
@@ -43,6 +43,7 @@ snakemake --version
- [STACKS 2.0b](http://catchenlab.life.illinois.edu/stacks/)
* Check version and if programs are correctly installed by typing :
+
```
process_radtags --version
clone_filter --version
@@ -54,6 +55,7 @@ populations --version
- [BWA 0.7.17](https://icb.med.cornell.edu/wiki/index.php/Elementolab/BWA_tutorial)
* Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/
+
```
tar -xvf bwa-x.x.x.tar.bz2
cd bwa-x.x.x
@@ -62,6 +64,7 @@ make
make install
```
* Check version and if programs are correctly installed by typing :
+
```
bwa
## should give you the output
@@ -72,6 +75,7 @@ Version: 0.7.17-r1188
- [SAMTOOLS 1.9 ](http://www.htslib.org/)
* Download `htslib` and `samtools` at : http://www.htslib.org/download/
* Building each desired package from source is very simple:
+
```
cd htslib-1.x
./configure --prefix=/where/to/install
@@ -85,6 +89,7 @@ make
make install
```
* Check version and if programs are correctly installed by typing :
+
```
samtools --version
## should give you the output
--
GitLab