From ccb7a5f281dd4ec758554a983729630abd3c1c6c Mon Sep 17 00:00:00 2001
From: remy <remy.dernat@umontpellier.fr>
Date: Tue, 12 Nov 2019 11:25:09 +0100
Subject: [PATCH] more explicit error message
---
orthofinder/scripts/blast_file_processor.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/orthofinder/scripts/blast_file_processor.py b/orthofinder/scripts/blast_file_processor.py
index d28af71..f882c1a 100644
--- a/orthofinder/scripts/blast_file_processor.py
+++ b/orthofinder/scripts/blast_file_processor.py
@@ -142,7 +142,7 @@ def WriteNormalizedBlastFile(blastDir_list, B, iSpecies, jSpecies, sep = "_", qD
newscore = B[sequence1ID, sequence2ID]
row.append(newscore)
except IndexError as e:
- sys.stderr.write("\nERROR: Matrix index : %s \n" % e)
+ sys.stderr.write("\nERROR: Matrix index on Blast species %d %d, sequences B[%d, %d] : %s \n" % (iSpeciesOpen, jSpeciesOpen, sequence1ID, sequence2ID, e))
pass
blastwriter.writerow(row)
tempfile.flush()
--
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