From ac298ea663fb6da2905c97d1a5628e9af3a679b6 Mon Sep 17 00:00:00 2001
From: remy <remy.dernat@umontpellier.fr>
Date: Sun, 24 Nov 2019 19:24:26 +0100
Subject: [PATCH] message error when encountering 0.0 Norm score
---
orthofinder/scripts/blast_file_processor.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/orthofinder/scripts/blast_file_processor.py b/orthofinder/scripts/blast_file_processor.py
index fea78cb..3627c29 100644
--- a/orthofinder/scripts/blast_file_processor.py
+++ b/orthofinder/scripts/blast_file_processor.py
@@ -142,7 +142,7 @@ def WriteNormalizedBlastFile(blastDir_list, B, iSpecies, jSpecies, sep = "_", qD
try:
newscore = B[sequence1ID, sequence2ID]
if newscore == 0.0:
- sys.stderr.write("\nERROR: 0.0 value detected !\n")
+ sys.stderr.write("\nERROR: 0.0 value detected in seq position %d %d for Blast species %d %d!\n" % (sequence1ID, sequence2ID, iSpeciesOpen, jSpeciesOpen))
# newscore = sc.scnorm.FixZeroNormalizedScores(iSpeciesOpen, float(row[11]))
row.append(newscore)
--
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