From 4e0858b7747f62a9a4b3b2f3efe5656497b0e54a Mon Sep 17 00:00:00 2001
From: remy <remy.dernat@umontpellier.fr>
Date: Tue, 12 Nov 2019 10:12:39 +0100
Subject: [PATCH] tempfile was not correctly flushed and closed
---
orthofinder/scripts/blast_file_processor.py | 2 ++
1 file changed, 2 insertions(+)
diff --git a/orthofinder/scripts/blast_file_processor.py b/orthofinder/scripts/blast_file_processor.py
index de669e0..d28af71 100644
--- a/orthofinder/scripts/blast_file_processor.py
+++ b/orthofinder/scripts/blast_file_processor.py
@@ -145,6 +145,8 @@ def WriteNormalizedBlastFile(blastDir_list, B, iSpecies, jSpecies, sep = "_", qD
sys.stderr.write("\nERROR: Matrix index : %s \n" % e)
pass
blastwriter.writerow(row)
+ tempfile.flush()
+ tempfile.close()
move(tempfile.name, fnNorm)
except Exception:
sys.stderr.write("Malformatted line in %sBlast%d_%d.txt\nOffending line was:\n" % (d, iSpecies, jSpecies))
--
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