From 18be62c94f41f32263f702444a1acc4929f2be7b Mon Sep 17 00:00:00 2001
From: remy <remy.dernat@umontpellier.fr>
Date: Mon, 25 Nov 2019 16:39:04 +0100
Subject: [PATCH] sys was not imported
---
orthofinder/scripts/scnorm.py | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/orthofinder/scripts/scnorm.py b/orthofinder/scripts/scnorm.py
index 4b482ab..6d8b448 100644
--- a/orthofinder/scripts/scnorm.py
+++ b/orthofinder/scripts/scnorm.py
@@ -31,6 +31,7 @@ import numpy as np
import matplotlib as mpl # install
mpl.use('Agg')
import matplotlib.pyplot as plt # install
+import sys
counter=0
@@ -103,13 +104,13 @@ class scnorm:
@staticmethod
def DrawLogLinear(params, x):
global counter
+ f = []
global f
nbvals=10000
maxBS=2500
minBS=0
x = np.linspace(minBS, maxBS, nbvals)
- plt.plot(x, scnorm.loglinear(x, *params), label='species '+str(counter))
- f = plt.plot(x, scnorm.loglinear(x, *params), label='species '+str(counter))
+ f.append(plt.plot(x, scnorm.loglinear(x, *params), label='species '+str(counter)))
plt.legend()
plt.xlabel('Bits Scores')
plt.ylabel('Normalized Scores')
--
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