From e6f78bfcf69c1239e7fdc2d88df1f1649463d416 Mon Sep 17 00:00:00 2001
From: khalid <khalid.belkhir@umontpellier.fr>
Date: Thu, 2 Dec 2021 10:58:48 +0100
Subject: [PATCH] Change Megahit PE output to contigs
---
tools/mitoz_annotate/mitoz_annotate.yaml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tools/mitoz_annotate/mitoz_annotate.yaml b/tools/mitoz_annotate/mitoz_annotate.yaml
index 78a2dfb2..b17ec9fd 100755
--- a/tools/mitoz_annotate/mitoz_annotate.yaml
+++ b/tools/mitoz_annotate/mitoz_annotate.yaml
@@ -60,7 +60,7 @@
command: /opt/biotools/release_MitoZ_v2.4-alpha/MitoZ.py annotate,
category: "annotation",
output_dir: mitoz_annotate_PE,
- inputs: [{ name: read, type: "reads" }, { name: read2, type: "reads" }, { name: fasta, type: "fasta" }],
+ inputs: [{ name: read, type: "reads" }, { name: read2, type: "reads" }, { name: fasta, type: "contigs" }],
outputs:
[
{ name: genbank_annots, type: "fa.gbf", file: "mitoz_annotate_SE_mitoscaf.fa.gbf", description: "The mitochondrial genome in GenBank format" },
--
GitLab