From 7d93bee19365c38c3097d722b8b8447009f8778f Mon Sep 17 00:00:00 2001
From: khalid <khalid.belkhir@umontpellier.fr>
Date: Tue, 30 Nov 2021 13:24:35 +0100
Subject: [PATCH] flye typo
---
tools/flye/flye.rule.snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tools/flye/flye.rule.snakefile b/tools/flye/flye.rule.snakefile
index 3f6d9848..9aaff3ac 100755
--- a/tools/flye/flye.rule.snakefile
+++ b/tools/flye/flye.rule.snakefile
@@ -8,7 +8,7 @@ rule <step_name>__flye:
command = config["<step_name>__flye_command"],
output_dir = config["results_dir"] + "/" + config["<step_name>__flye_output_dir"]+ "/",
pacbio_oxfordNanopore = config["<step_name>__flye_pacbio_oxfordNanopore"],
- scaffold = "--scaffold" if config["<step_name>__flye_scaffold"], else "",
+ scaffold = "--scaffold" if config["<step_name>__flye_scaffold"] else "",
keep_haplotypes = "--keep-haplotypes" if config["<step_name>__flye_keep_haplotypes"] else "",
log:
config["results_dir"] + "/logs/" + config["<step_name>__flye_output_dir"] + "/flye_log.txt"
--
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