From 4d7f2abaf58e0f1b43a00bc6ffd70e84c2caea6a Mon Sep 17 00:00:00 2001
From: khalid <khalid.belkhir@umontpellier.fr>
Date: Thu, 2 Dec 2021 10:54:38 +0100
Subject: [PATCH] Change Megahit PE output to contigs
---
tools/megahit/megahit.yaml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tools/megahit/megahit.yaml b/tools/megahit/megahit.yaml
index e2c23f38..a2c7c585 100755
--- a/tools/megahit/megahit.yaml
+++ b/tools/megahit/megahit.yaml
@@ -54,7 +54,7 @@
inputs: [{ name: read, type: "reads" }, { name: read2, type: "reads" }],
outputs:
[
- { name: contigs, type: "fasta", file: "assembly.contigs.fa", description: "Result of the assembly" },
+ { name: contigs, type: "contigs", file: "assembly.contigs.fa", description: "Result of the assembly" },
],
options:
[
--
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