diff --git a/tools/igv_visualize/igv_visualize.rule.snakefile b/tools/igv_visualize/igv_visualize.rule.snakefile index 425e190f069292015620923f9acd9229a3247a1f..ec498c59766ee86c9282c765b3130b8c350f66f4 100755 --- a/tools/igv_visualize/igv_visualize.rule.snakefile +++ b/tools/igv_visualize/igv_visualize.rule.snakefile @@ -11,7 +11,7 @@ rule <step_name>__igv_visualize: shell: #plot IGV mapping res "cd {params.output_dir}; " - "sed -i 's|DEFAULT_GENOME_KEY=.*|DEFAULT_GENOME_KEY={input.genome}|' /root/igv/prefs.properties; " + "if [ -f /root/igv/prefs.properties ]; then sed -i 's|DEFAULT_GENOME_KEY=.*|DEFAULT_GENOME_KEY={input.genome}|' /root/igv/prefs.properties fi; " "cat <<-EOF > igv.batch\n" "new\n" "genome {input.genome}\n"