diff --git a/tools/snap_index/snap_index.yaml b/tools/snap_index/snap_index.yaml
index 7c71ca81f35aba20795d87425c4590c2b6e113ec..aea3aaa10747bc7a791fa14b1b046d8ee84a97c5 100755
--- a/tools/snap_index/snap_index.yaml
+++ b/tools/snap_index/snap_index.yaml
@@ -13,7 +13,7 @@
       {
         name: snap_index,
         cname:  "snap index",
-        command: snap-align index,
+        command: snap-aligner index,
         category: "indexing",
         output_dir: snap/index,
         inputs: [{ name: genome_fasta, type: "contigs", description: "Fasta reference", from: "parameter" }],