From 151438574bdc01493b7fdf7ed5555b14a39106f9 Mon Sep 17 00:00:00 2001
From: khalid <khalid.belkhir@umontpellier.fr>
Date: Tue, 30 Nov 2021 13:28:04 +0100
Subject: [PATCH] remove uneaded spaces

---
 tools/mitoz_findmitoscaf/mitoz_findmitoscaf.rule.snakefile | 2 --
 1 file changed, 2 deletions(-)

diff --git a/tools/mitoz_findmitoscaf/mitoz_findmitoscaf.rule.snakefile b/tools/mitoz_findmitoscaf/mitoz_findmitoscaf.rule.snakefile
index 850f6df1..b80e7772 100755
--- a/tools/mitoz_findmitoscaf/mitoz_findmitoscaf.rule.snakefile
+++ b/tools/mitoz_findmitoscaf/mitoz_findmitoscaf.rule.snakefile
@@ -15,9 +15,7 @@ rule <step_name>__mitoz_findmitoscaf:
         # Si l'on veut eviter l'étape cal_bwa_abundance.py qui fait un mapping couteux sur tous les scaffolds de l'assemblage :
         # convert Megahit or flye output to format similar to one produced by abundance estimate procedure with a dummy abundance of 0.1
         # N.B. assembly fasta file must be one line per sequence format
-
         """awk '{{posit = index($0,">"); if (posit == 1) {{split($0,a," "); sub(">",">C",a[1]); ident=a[1]"\\t100.0\\tlength="}} else {{long=length($0);if (long > 0) {{ident=ident long; print ident"\\n"$0 }} }}}}' {input.fasta} > /tmp/assembly.contigs.fa;"""
-
         "mkdir -p {params.output_dir} && "
         "cd {params.output_dir}; "
         "{params.command} "
-- 
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