From 1dff23c5a93a791e3d49f1e003310e061d1d26d7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dernat=20R=C3=A9my?= <remy.dernat@umontpellier.fr>
Date: Thu, 20 May 2021 15:05:54 +0200
Subject: [PATCH] adding R modulefile for a new version of 3.5.3
---
envfiles/R/3.5.3.modified | 49 +++++++++++++++++++++++++++++++++++++++
1 file changed, 49 insertions(+)
create mode 100644 envfiles/R/3.5.3.modified
diff --git a/envfiles/R/3.5.3.modified b/envfiles/R/3.5.3.modified
new file mode 100644
index 0000000..b12673a
--- /dev/null
+++ b/envfiles/R/3.5.3.modified
@@ -0,0 +1,49 @@
+#%Module######################################################################
+#
+# 20210520 R-3.5.3 updated modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-3.5.3"
+puts stderr "The program R-3.5.3"
+puts stderr "is added to PATH."
+}
+
+set rel [uname release]
+global prodlist
+set prodlist { singularity/3.7.3 }
+
+
+set is_module_rm [module-info mode remove]
+
+catch {set modulehomes $env(MODULEPATH)}
+if { [ module-info mode load ] } {
+ foreach prod $prodlist {
+ foreach mfilehome [ split $modulehomes :] {
+ if { [file exists $mfilehome/$prod] } {
+ module load $prod
+ }
+ }
+ }
+}
+
+if { [ module-info mode remove ] } {
+ foreach prod $prodlist {
+ foreach mfilehome [ split $modulehomes :] {
+ if { [file exists $mfilehome/$prod] } {
+ module unload $prod
+ unset-alias R
+ unset-alias Rscript
+ }
+ }
+ }
+}
+
+
+set R_LEVEL 3.5.3
+
+# aliases not passing through SGE. Would need to source a file...
+prepend-path PATH /share/apps/sing-images/3.7.3
+
+append-path PE_PRODUCT_LIST R-$R_LEVEL
--
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