From fd911ebf102faa12cad1fce64fa07107e589b94a Mon Sep 17 00:00:00 2001
From: mmassaviol <mathieu.massaviol@hotmail.fr>
Date: Tue, 17 Dec 2019 14:16:43 +0100
Subject: [PATCH] debug static configfile in rule all
---
files/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/files/Snakefile b/files/Snakefile
index f08ebe3..c67362f 100644
--- a/files/Snakefile
+++ b/files/Snakefile
@@ -463,7 +463,7 @@ rule all:
scripts = directory(config["results_dir"]+"/workflow/scripts"),
params = config["results_dir"]+"/workflow/params.yml"
params:
- params_file = config["results_dir"]+"/params.yml",
+ params_file = workflow.overwrite_configfile,
shell:
"cp /workflow/Snakefile {output.Snakefile} && "
"cp /workflow/get_samples.py {output.get_samples} && "
--
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