diff --git a/files/Snakefile b/files/Snakefile index f08ebe30c1148da74477fac61eaeeb7b2538314d..c67362fc71341f84123518f4bf1e8499b2cbf286 100644 --- a/files/Snakefile +++ b/files/Snakefile @@ -463,7 +463,7 @@ rule all: scripts = directory(config["results_dir"]+"/workflow/scripts"), params = config["results_dir"]+"/workflow/params.yml" params: - params_file = config["results_dir"]+"/params.yml", + params_file = workflow.overwrite_configfile, shell: "cp /workflow/Snakefile {output.Snakefile} && " "cp /workflow/get_samples.py {output.get_samples} && "