From 91d2cdd13983319657d61423094883b9d1f3ed65 Mon Sep 17 00:00:00 2001
From: khalid belkhir <khalid.belkhir@univ-montp2.fr>
Date: Mon, 16 Dec 2019 14:51:09 +0100
Subject: [PATCH] Change docker image name to deploy
---
RunCmdLine.sh | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/RunCmdLine.sh b/RunCmdLine.sh
index 0e1547b..a6bde6e 100644
--- a/RunCmdLine.sh
+++ b/RunCmdLine.sh
@@ -22,22 +22,24 @@ mkdir -p $Results
DOCK_VOL+=" --mount type=bind,src=$Data,dst=/Data"
DOCK_VOL+=" --mount type=bind,src=$Results,dst=/Results"
+# config file must be in /Data or /Results !
config=$3
+
cores=$4
if [ $# -lt 5 ]
then
- APP_IMG="mbbteam/radseqdenovo:latest"
+ APP_IMG="mbbteam/rnaseqde:latest"
else
IMG_SRC=$5
case $IMG_SRC in
docker )
- APP_IMG="mbbteam/radseqdenovo:latest" ;;
+ APP_IMG="mbbteam/rnaseqde:latest" ;;
local)
- docker build . -t radseqdenovo:latest
- APP_IMG="radseqdenovo:latest" ;;
+ docker build . -t rnaseqde:latest
+ APP_IMG="rnaseqde:latest" ;;
mbb)
- #APP_IMG="X.X.X.X:5000/radseqdenovo:latest" ;;
+ #APP_IMG="X.X.X.X:5000/rnaseqde:latest" ;;
esac
fi
--
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