diff --git a/RunCmdLine.sh b/RunCmdLine.sh index 0e1547bb122f9219d9f04675ba190a91731715b7..a6bde6e9d303af59676f203d01bb9fe83987ead0 100644 --- a/RunCmdLine.sh +++ b/RunCmdLine.sh @@ -22,22 +22,24 @@ mkdir -p $Results DOCK_VOL+=" --mount type=bind,src=$Data,dst=/Data" DOCK_VOL+=" --mount type=bind,src=$Results,dst=/Results" +# config file must be in /Data or /Results ! config=$3 + cores=$4 if [ $# -lt 5 ] then - APP_IMG="mbbteam/radseqdenovo:latest" + APP_IMG="mbbteam/rnaseqde:latest" else IMG_SRC=$5 case $IMG_SRC in docker ) - APP_IMG="mbbteam/radseqdenovo:latest" ;; + APP_IMG="mbbteam/rnaseqde:latest" ;; local) - docker build . -t radseqdenovo:latest - APP_IMG="radseqdenovo:latest" ;; + docker build . -t rnaseqde:latest + APP_IMG="rnaseqde:latest" ;; mbb) - #APP_IMG="X.X.X.X:5000/radseqdenovo:latest" ;; + #APP_IMG="X.X.X.X:5000/rnaseqde:latest" ;; esac fi