From 7ad468db476ad430e4172c69e41b274a98bfef26 Mon Sep 17 00:00:00 2001
From: mmassaviol <mathieu.massaviol@hotmail.fr>
Date: Mon, 16 Dec 2019 09:19:22 +0100
Subject: [PATCH] Debug docker run
---
RunCmdLine.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/RunCmdLine.sh b/RunCmdLine.sh
index ce90d95..b60521d 100644
--- a/RunCmdLine.sh
+++ b/RunCmdLine.sh
@@ -41,7 +41,7 @@ else
esac
fi
-CONTAINER_ID=$( docker exec --rm -it $DOCK_VOL $CONTAINER_ID snakemake -s /workflow/Snakefile all --configfile $config --cores $cores)
+CONTAINER_ID=$( docker run --rm $DOCK_VOL $APP_IMG snakemake -s /workflow/Snakefile all --configfile $config --cores $cores)
if [ $CONTAINER_ID ]
then
--
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