diff --git a/Dockerfile b/Dockerfile
index 6b31fce99b7440bd5706176ff16291ac9c52c0f7..ab8b2123eb2ac4477929cff2dcc37d4f96d17d43 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -47,7 +47,8 @@ ENV LANGUAGE en_US:en
 ENV LC_ALL en_US.UTF-8
 
 #This part is necessary to run on ISEM cluster
-RUN mkdir -p /share/apps/lib \
+RUN mkdir -p /share/apps/bin \
+ && mkdir -p /share/apps/lib \
  && mkdir -p /share/apps/gridengine \
  && mkdir -p /share/bio \
  && mkdir -p /opt/gridengine \
@@ -57,6 +58,6 @@ RUN mkdir -p /share/apps/lib \
  && ln -s /bin/bash /bin/isem_bash \
  && /usr/sbin/groupadd --system --gid 400 sge \
  && /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
- 
+
 EXPOSE 3838
 CMD ["Rscript", "-e", "setwd('/sagApp/'); shiny::runApp('/sagApp/app.R',port=3838 , host='0.0.0.0')"]
diff --git a/deploy.sh b/deployIFB.sh
similarity index 100%
rename from deploy.sh
rename to deployIFB.sh
diff --git a/files/singularity.def b/files/singularity.def
index 6ab135b4c311807af39903a5260fa32c0d16f1bc..34e4f81b00501fef0f9327a1822f46d225759cd0 100644
--- a/files/singularity.def
+++ b/files/singularity.def
@@ -122,9 +122,9 @@ singularity run --app appName this_container.sif
 	Rscript -e 'BiocManager::install("BiocParallel", version = "3.8",Ncpus=8, clean=TRUE)'
 
 mkdir -p /share/apps/bin
-mkdir /share/apps/lib
-mkdir /share/apps/gridengine
-mkdir /share/bio
+mkdir -p /share/apps/lib
+mkdir -p /share/apps/gridengine
+mkdir -p /share/bio
 mkdir -p /opt/gridengine
 mkdir -p /export/scrach
 mkdir -p /usr/lib64
diff --git a/waw_workflow.qsub b/waw_workflow.qsub
index 50bc865513273ddcdb712dce5e904249a1757541..13b679e537e2b1c531f140f40735ae2ed6578d7a 100644
--- a/waw_workflow.qsub
+++ b/waw_workflow.qsub
@@ -19,10 +19,9 @@ resultsDir=$2
 #configfile must be set to /Data/config.yaml
 configFile=$3 
 cores=$4
-
 #if we must build the image from docker image
 singularity build rnaseqde.simg docker://mbbteam/rnaseqde:latest
 
 
 #Run the workflow in cmd line
-singularity exec -B $dataDir:/Data -B $resultsDir:/Results rnaseqde.simg snakemake  -s /workflow/Snakefile --configfile $configFile --cores $cores
\ No newline at end of file
+singularity exec -B $dataDir:/Data -B $resultsDir:/Results rnaseqde.simg snakemake  -s /workflow/Snakefile --configfile $configFile --cores $cores