diff --git a/README.md b/README.md index 35756d2c7c3d6648d4c507a23969c4ad9c15e540..b756b9d72962a4a6a0623dec5b19a533f17b4a33 100644 --- a/README.md +++ b/README.md @@ -5,5 +5,5 @@ following its specifications within Nicolas Galtier's draft paper *Phylogenetic conflicts: distinguishing gene flow from incomplete lineage sorting* (2023). -Sources available at: https://gitlab.mbb.cnrs.fr/ibonnici/aphid/ +Sources available at: https://gitlab.com/iago-lito/aphid/ Documentation at: https://iago-lito.gitlab.io/aphid/ diff --git a/containerize.bash b/containerize.bash index fef039f64363018474ca82c829325e74d8959dda..0a5a2c97228b62a727509a2d9555ace494e661ca 100755 --- a/containerize.bash +++ b/containerize.bash @@ -43,7 +43,7 @@ read -r -d '' COMPILATION_LAYER <<-EOF #---- Compilation ---------------------------------------------------------- # Get source code. cd /opt - git clone --recursive https://gitlab.mbb.univ-montp2.fr/ibonnici/${REPO} + git clone --recursive https://gitlab.com/iago-lito/${REPO} cd ${REPO} # Debug test. diff --git a/doc/src/install.md b/doc/src/install.md index 189d9336c66829e879af9ee6e2cb10ce705eb1b7..70ad5a18ed9c13c9d6efd258234e2018387fa24e 100644 --- a/doc/src/install.md +++ b/doc/src/install.md @@ -13,7 +13,7 @@ First, build the container image as a super user: ```sh # Get definition file. curl -L \ - https://gitlab.mbb.cnrs.fr/ibonnici/aphid/-/jobs/artifacts/main/raw/singularity.def?job=container-recipes \ + https://gitlab.com/iago-lito/aphid/-/jobs/artifacts/main/raw/singularity.def?job=container-recipes \ > aphid.def # (or download by hand) # Build image. @@ -39,7 +39,7 @@ provided you have [Docker] installed. First, build the container image: ```sh docker buildx build -t aphid \ - https://gitlab.mbb.cnrs.fr/ibonnici/aphid/-/jobs/artifacts/main/raw/Dockerfile?job=container-recipes + https://gitlab.com/iago-lito/aphid/-/jobs/artifacts/main/raw/Dockerfile?job=container-recipes ``` <div class="warning"> @@ -62,7 +62,7 @@ and a [rust stable toolchain] installed on your system. First clone and compile the project: ```sh -git clone --recursive https://gitlab.mbb.cnrs.fr/ibonnici/aphid/ +git clone --recursive https://gitlab.com/iago-lito/aphid/ cd aphid cargo test --release cargo build --release diff --git a/doc/src/intro.md b/doc/src/intro.md index 66f9cd6b77bb80be482e51e2073025526c5ad6c3..3848078caf4d0169651a1fba5075988f7036dbda 100644 --- a/doc/src/intro.md +++ b/doc/src/intro.md @@ -16,7 +16,7 @@ and the associated command-line program: - The original paper describing the method: [https://doi.org/10.24072/pcjournal.359](https://doi.org/10.24072/pcjournal.359). - The associated program to use the method: - [https://gitlab.mbb.cnrs.fr/ibonnici/aphid][repo]. + [https://gitlab.com/iago-lito/aphid][repo]. This document assumes that you are familiar with the method described in the paper. @@ -33,4 +33,4 @@ and the outputs produced. Bug reports, feature requests and contributions are welcome [here][repo]. -[repo]: https://gitlab.mbb.cnrs.fr/ibonnici/aphid/ +[repo]: https://gitlab.com/iago-lito/aphid/