edna

Comparison of multiple bioinformatic programs for each step of eDNA analysis

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

Simulations of metabarcoding data from fish 12S Teleo1

a shiny application to query information about our metabarcoding data

Collection of scripts to build a reference database.

metabarcoding test data for snakemake rapidrun workflow

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

data test to check metabarcoding workflow processing

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers