Explore projects

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

GSSA

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Analysis around palinurus ortus

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.

système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

How to design a primer ?

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

Comparison of multiple bioinformatic programs for each step of eDNA analysis