From db6c7339ced6718790b787d95121e6ec4cb5ec01 Mon Sep 17 00:00:00 2001
From: peguerin <pierre-edouard.guerin@cefe.cnrs.fr>
Date: Mon, 2 Dec 2019 16:51:50 +0100
Subject: [PATCH] test flexbar FIRST TRY
---
03_dereplication/test/test_derep_tally.sh | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/03_dereplication/test/test_derep_tally.sh b/03_dereplication/test/test_derep_tally.sh
index 9148711..49f2e73 100644
--- a/03_dereplication/test/test_derep_tally.sh
+++ b/03_dereplication/test/test_derep_tally.sh
@@ -3,4 +3,7 @@ tally=${SINGULARITY_EXEC_CMD}" "${EDNATOOLS_SIMG}" tally"
ALL_SAMPLE_SEQ_UNIQ=$(pwd)/03_dereplication/test/01_vsearch/grinder_teleo1_all_sample_clean.uniq.fasta
-$tally --fasta-in --fasta-out -i ${ALL_SAMPLE_SEQ_UNIQ} -o test
\ No newline at end of file
+$tally --fasta-in --fasta-out -i ${ALL_SAMPLE_SEQ_UNIQ} -o test
+
+$obigrep -s '^[ACGT]+$' -l 20 test > test20
+
--
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