From d8db535813ea839b6286a5776280961d71b3612f Mon Sep 17 00:00:00 2001
From: peguerin <pierre-edouard.guerin@cefe.cnrs.fr>
Date: Tue, 3 Dec 2019 10:20:59 +0100
Subject: [PATCH] la bonne commande flexbar
---
02_demultiplex/test/test_demultiplex_flexbar.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/02_demultiplex/test/test_demultiplex_flexbar.sh b/02_demultiplex/test/test_demultiplex_flexbar.sh
index 93a692f..87c4812 100644
--- a/02_demultiplex/test/test_demultiplex_flexbar.sh
+++ b/02_demultiplex/test/test_demultiplex_flexbar.sh
@@ -10,7 +10,7 @@ R2_fastq="${DATA_PATH}"/"$pref"/"$pref"_R2.fastq
## path to 'tags.fasta'
Tags=`pwd`"/02_demultiplex/Tags.fasta"
-$flexbar -r $R1_fastq -p $R2_fastq --barcodes $Tags --barcodes2 $Tags -bt 0 -t 02_demultiplex/test/02_flexbar/"$pref"
+$flexbar -r $R1_fastq -p $R2_fastq --barcodes2 $Tags -bt 0 -t 02_demultiplex/test/02_flexbar/"$pref" -n 4
$flexbar -r $R1_fastq --barcodes $Tags -bt 0 -t 02_demultiplex/test/02_flexbar/"$pref"
--
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