From c1db7da4f08e19298be919ced9edd43133b86caf Mon Sep 17 00:00:00 2001
From: peguerin <pierre-edouard.guerin@cefe.cnrs.fr>
Date: Fri, 6 Dec 2019 14:27:49 +0100
Subject: [PATCH] move to current dir

---
 99_utils/submitjob_sge_cluster/bash2sge.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/99_utils/submitjob_sge_cluster/bash2sge.sh b/99_utils/submitjob_sge_cluster/bash2sge.sh
index 4560020..be4ff6d 100644
--- a/99_utils/submitjob_sge_cluster/bash2sge.sh
+++ b/99_utils/submitjob_sge_cluster/bash2sge.sh
@@ -38,8 +38,8 @@ sed -e "s/JOB_NAME/$nom_qsub_script/g" \
 -e "s|OUT_FILE|$run_output/$nom_qsub_script\.out|g" \
 -e "s|ERR_FILE|$run_output/$nom_qsub_script\.err|g" \
 $template_script  > $qsub_script/temp_script.sh
-echo -e "cd "$(pwd)"\n" >> $qsub_script/temp_script.sh
-echo -e "bash $location_bash_script/$nom_bash_script.sh" >> $qsub_script/temp_script.sh
+echo -e "cd "$(pwd) >> $qsub_script/temp_script.sh
+echo -e "bash $location_bash_script/$nom_bash_script.sh\n" >> $qsub_script/temp_script.sh
 mv $qsub_script/temp_script.sh $qsub_script/$nom_qsub_script".sh"
 echo $qsub_script/$nom_qsub_script".sh is ready to be qsubmitted."
 #qsub $qsub_script/$nom_qsub_script".sh"
-- 
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