diff --git a/99_utils/submitjob_sge_cluster/bash2sge.sh b/99_utils/submitjob_sge_cluster/bash2sge.sh index 456002047049502133ec0c8df250e9d1192e69ec..be4ff6dde3aacca51acc9b403797f2deef11b172 100644 --- a/99_utils/submitjob_sge_cluster/bash2sge.sh +++ b/99_utils/submitjob_sge_cluster/bash2sge.sh @@ -38,8 +38,8 @@ sed -e "s/JOB_NAME/$nom_qsub_script/g" \ -e "s|OUT_FILE|$run_output/$nom_qsub_script\.out|g" \ -e "s|ERR_FILE|$run_output/$nom_qsub_script\.err|g" \ $template_script > $qsub_script/temp_script.sh -echo -e "cd "$(pwd)"\n" >> $qsub_script/temp_script.sh -echo -e "bash $location_bash_script/$nom_bash_script.sh" >> $qsub_script/temp_script.sh +echo -e "cd "$(pwd) >> $qsub_script/temp_script.sh +echo -e "bash $location_bash_script/$nom_bash_script.sh\n" >> $qsub_script/temp_script.sh mv $qsub_script/temp_script.sh $qsub_script/$nom_qsub_script".sh" echo $qsub_script/$nom_qsub_script".sh is ready to be qsubmitted." #qsub $qsub_script/$nom_qsub_script".sh"