diff --git a/99_utils/submitjob_sge_cluster/bash2sge.sh b/99_utils/submitjob_sge_cluster/bash2sge.sh index 0f77c1ef11fb78269f4295ac8b7fe6c81f365445..5a047348d8c7f7e3cbbc21dca46d7cb79505c8d7 100644 --- a/99_utils/submitjob_sge_cluster/bash2sge.sh +++ b/99_utils/submitjob_sge_cluster/bash2sge.sh @@ -38,7 +38,7 @@ sed -e "s/JOB_NAME/$nom_qsub_script/g" \ -e "s|OUT_FILE|$run_output/$nom_qsub_script\.out|g" \ -e "s|ERR_FILE|$run_output/$nom_qsub_script\.err|g" \ $template_script > $qsub_script/temp_script.sh -echo -e "cd "$(pwd)"\n" +echo -e "cd "$(pwd)"\n" >> $qsub_script/temp_script.sh echo -e "bash $location_bash_script/$nom_bash_script.sh\n" >> $qsub_script/temp_script.sh mv $qsub_script/temp_script.sh $qsub_script/$nom_qsub_script".sh" echo $qsub_script/$nom_qsub_script".sh is ready to be qsubmitted."